Family Search for PF07119 (DUF1375)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF07119 hits 14 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PP0549 lipoprotein, putative from Pseudomonas putida KT2440
Aligns to 31:81 / 95 (53.7%), covers 100.0% of PF07119, 70.0 bits

• UEG Week 2023 Poster Presentations
  , United European gastroenterology journal 2023

PA3399 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 48:100 / 113 (46.9%), covers 98.0% of PF07119, 67.3 bits

• The ABC of Biofilm Drug Tolerance: the MerR-Like Regulator BrlR Is an Activator of ABC Transport Systems, with PA1874-77 Contributing to the Tolerance of Pseudomonas aeruginosa Biofilms to Tobramycin
  Poudyal, Antimicrobial agents and chemotherapy 2018
  • “...fusion ABC transporter Probable secretion protein PA3399-3402 PA3399 PA3400 PA3401 PA3402 Hypothetical protein ABC-2 family transporter protein ABC-2 family...”
• Analysis of Pseudomonas putida KT2440 gene expression in the maize rhizosphere: in vivo [corrected] expression technology capture and identification of root-activated promoters
  Ramos-González, Journal of bacteriology 2005
  • “...an unknown hypothetical protein conserved in P. aeruginosa (PA3399) (47% identity and 62% similarity), between PP3854 and PP3855. Rap2-39 is a predicted...”

PSPTO_0731 lipoprotein, putative from Pseudomonas syringae pv. tomato str. DC3000
Aligns to 34:84 / 98 (52.0%), covers 100.0% of PF07119, 61.7 bits

• Proteomic Profiling Reveals Distinct Bacterial Extracellular Vesicle Subpopulations with Possibly Unique Functionality
  McMillan, Applied and environmental microbiology 2023 (secret)

VT47_13300 YceK/YidQ family lipoprotein from Pseudomonas syringae pv. syringae
Aligns to 59:110 / 125 (41.6%), covers 100.0% of PF07119, 49.5 bits

• Identification of the Genes of the Plant Pathogen Pseudomonas syringae MB03 Required for the Nematicidal Activity Against Caenorhabditis elegans Through an Integrated Approach
  Ali, Frontiers in microbiology 2022
  • “...scoB (VT47_15125) were up-regulated, whereas scoP (V47_01435), queD (VT47_04670), rpsT (VT47_03545), and two hypothetical proteins (VT47_13300, VT47_14685) were down-regulated during hostpathogen interaction regardless of the bacterial growth phase ( Supplementary Table 5 ). FIGURE 3 Heatmap showing differential expression of bacterial genes in response to C....”

YPO4086 putative lipoprotein from Yersinia pestis CO92
Aligns to 32:76 / 112 (40.2%), covers 94.1% of PF07119, 46.1 bits

• Analysis of autoinducer-2 quorum sensing in Yersinia pestis
  Yu, Infection and immunity 2013
  • “...change of 1.5 included only two genes, YPO4086 (lipoprotein) and fliH (flagellar assembly protein). Downregulated genes in AI-2-treated cells included psaAB...”

PFLU0474 hypothetical protein from Pseudomonas fluorescens SBW25
Aligns to 54:112 / 125 (47.2%), covers 100.0% of PF07119, 40.5 bits

• Adaptive divergence in experimental populations of Pseudomonas fluorescens. V. Insight into the niche specialist fuzzy spreader compels revision of the model Pseudomonas radiation
  Ferguson, Genetics 2013
  • “...function--and fuzV (Figure 1); in most other species pflu0474 is linked to the permease component of a putative ABC-type multidrug transport system. This...”

LIMLP_04235 YceK/YidQ family lipoprotein from Leptospira interrogans serovar Manilae
Aligns to 34:84 / 514 (9.9%), covers 94.1% of PF07119, 38.9 bits

• The oxidative stress response of pathogenic Leptospira is controlled by two peroxide stress regulators which putatively cooperate in controlling virulence
  Zavala-Alvarado, PLoS pathogens 2021
  • “...regulators would not be differentially expressed in the single mutants. The few genes (LIMLP_02010, LIMLP_04255, LIMLP_04235, LIMLP_11810, LIMLP_14225, LILP_15470, and LIMLP_18235) and ncRNAs that display differential expression in the single mutants in our transcriptomic studies (this study and [ 19 ]) indicate a certain functional redundancy...”

LIC12649 hypothetical protein from Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Aligns to 34:84 / 514 (9.9%), covers 94.1% of PF07119, 38.4 bits

• Leptospira interrogans serovar copenhageni harbors two lexA genes involved in SOS response
  Fonseca, PloS one 2013
  • “...evident during analysis of induction after UV-C irradiation by qPCR ( Figure 8B ). The LIC12649 and LIC12650-12652 transcripts did not show significant fold change in expression, whereas LIC12653 and lexA2 -LIC12655 were both up regulated by more than six fold ( Figure 8B ). Since...”
• Transcriptional response of Leptospira interrogans to iron limitation and characterization of a PerR homolog
  Lo, Infection and immunity 2010
  • “...LA1539 LA1593 LA1597 LA1601 LA1759 LA1796 LA2628 LA2753 LA2824 LIC12649 LA0630 LA0611 LA2459 LA1481 LA0634 LA1457 LA0632 3.8 5.1 2.7 3.2 5.2 5.9 10.1 6.2 2.7...”

Pfl01_2488 hypothetical protein from Pseudomonas fluorescens Pf0-1
Aligns to 44:95 / 128 (40.6%), covers 94.1% of PF07119, 38.3 bits

• Occurrence, evolution, and functions of DNA phosphorothioate epigenetics in bacteria
  Tong, Proceedings of the National Academy of Sciences of the United States of America 2018
  • “...amidase (Pfl01_5657), and a hypothetical protein (Pfl01_2488). The transcription levels of the differentially expressed genes, which belonged to...”

c4608 hypothetical protein from Escherichia coli CFT073
Aligns to 33:77 / 110 (40.9%), covers 92.2% of PF07119, 35.9 bits

• Role of sigma E-regulated genes in Escherichia coli uropathogenesis
  Redford, Infection and immunity 2006
  • “...c1313 c0066 c3989 c3904 c3473 c2289 c3718 c3805 c3544 c4121 c4608 c0457-9 c0197 c0197 c0215 mdoG surA degQ yraP dsbC cutC ytfJ ygiM yggN fkpA yidQ lacZYA degP...”

EcfI / b3688 DUF1375 domain-containing putative lipoprotein YidQ from Escherichia coli K-12 substr. MG1655 (see 2 papers)
P0ADM4 Uncharacterized protein YidQ from Escherichia coli (strain K12)
b3688 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 33:77 / 110 (40.9%), covers 92.2% of PF07119, 35.9 bits

• Comparative Analysis of Outer Membrane Vesicle Isolation Methods With an Escherichia coli tolA Mutant Reveals a Hypervesiculating Phenotype With Outer-Inner Membrane Vesicle Content
  Reimer, Frontiers in microbiology 2021
  • “...0.017 9.5 Increased in tolA P76177 ydgH Protein YdgH tolA <0.00010 INF Increased in tolA P0ADM4 yidQ Uncharacterized protein YidQ tolA 0.0091 INF Increased in tolA P0AF70 yjeI Uncharacterized protein YjeI tolA 0.00013 29 Increased in tolA AC, accession number; ID, identification number; INF, infinity value...”
• The two-component system histidine kinase EnvZ contributes to Avian pathogenic Escherichia coli pathogenicity by regulating biofilm formation and stress responses
  Fu, Poultry science 2023
  • “...protein 3b (a), protease VII 2.16 b0112 aroP Aromatic amino acid transport protein AroP 1.96 b3688 yidQ Outer membrane protein 1.80 FeS cluster b4291 fecA Iron complex outer membrane receptor protein, putative iron compound receptor 7.37 b1451 yncD Iron complex outer membrane receptor protein 3.24 b1684...”
• Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655
  Brokx, Journal of bacteriology 2004
  • “...yidQ yidX yjeI b0196 b0557 b0867 b0909 b1193 b1379 b1585 b2617 b2936 b3688 b3696 b4144 220.45 P 98.2 P 48.35 P 15.1 P 106.5 P 35.1 P 25 P 199.45 P 47.3 P 86.85...”
  • “...(b1379), ynfC (b1585), smpA (b2617), yggG (b2936), yidQ (b3688), yidX (b3696), and yjeI (b4144)--are included in the microarray results, but RT-PCR data were...”

YceK / b1050 DUF1375 domain-containing lipoprotein YceK from Escherichia coli K-12 substr. MG1655 (see 5 papers)
b1050 predicted lipoprotein from Escherichia coli str. K-12 substr. MG1655
ECs1428 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 31:69 / 75 (52.0%), covers 51.0% of PF07119, 33.0 bits

• YcfR (BhsA) influences Escherichia coli biofilm formation through stress response and surface hydrophobicity
  Zhang, Journal of bacteriology 2007
  • “...yceK yjbJ yjdN ygaM ymgE b0806 b0456 b1050 b4045 b4107 b2672 b1195 Hypothetical protein Hypothetical protein Hypothetical protein Highly abundant nonessential...”
• Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
  Weber, Journal of bacteriology 2005
  • “...b0389 b0419 b0581 b0643 b0707 b0753 b0767 b0865 b1003 b1050 b1188 b1164 b1258 b1259 b1341 b1547 b1614 b1783 b1784 b1847 b1999 b2080 b2086 b2602 b2660 b2672...”
• Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655
  Brokx, Journal of bacteriology 2004
  • “...b0453 b0463 b0498 b0589 b0633 b0641 b0735 b0741 b0772 b0830 b1050 b1063 b1079 b1104 b1105 b1209 b1283 b1382 b1431 b1491 b1510 49.65 P 569.75 P 211 P 1,508.05 P...”
• 47th Annual Meeting March 1-5, 2003 Henry B. Gonzalez Convention Center, San Antonio, Texas : Wednesday Posters, Part 1
  , Biophysical journal 2003
• Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
  Smulski, Journal of bacteriology 2001
  • “...b0800 b0806 b0836 b0865 b0897 b0964 b0966 b1003 b1045 b1050 b1060 b1103 b1104 b1105 b1107 b1108 b1111 b1112 b1128 b1145 b1168 b1178 b1195 b1205 b1256 b1257...”
• 45th Annual Meeting February 17-21, 2001 Boston, Massachusetts : February 19, 2001 Monday Posters, Part 3
  , Biophysical journal 2001
• Gene expression induced in Escherichia coli O157:H7 upon exposure to model apple juice
  Bergholz, Applied and environmental microbiology 2009
  • “...yjiA 1.03 1.03 2.98 0.89 Cell envelope ECs0100 ECs1428 ECs2001 ECs2306 ECs2348 ECs2515 ECs2690 ECs2859 ECs2914 ECs3151 ECs3669 ECs3860 ECs4321 ECs4493 ECs4666...”

KPN_04092 hypothetical protein from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Aligns to 9:53 / 86 (52.3%), covers 92.2% of PF07119, 30.9 bits

• Functional Genomic Screen Identifies Klebsiella pneumoniae Factors Implicated in Blocking Nuclear Factor κB (NF-κB) Signaling
  Tomás, The Journal of biological chemistry 2015
  • “...KPN_03654 and KPN_03655 Y/Y P028H3 Between ibpA and yidQ KpST66_0014 and KpST66_0015 Between KPN_04091 and KPN_04092 Y/Y P041H3 Between rimI and ygjF KpST66_5016 and KpST66_5017 Between KPN_04415 and KPN_04416 Y/Y P024D12 Between yhaM and psiE KpST66_5012 and KpST66_5013 Between KPN_04419 and KPN_04420 Y/Y P051G11 Between phnA...”

HI0650 H. influenzae predicted coding region HI0650 from Haemophilus influenzae Rd KW20
P44028 Uncharacterized protein HI_0650 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Aligns to 30:67 / 70 (54.3%), covers 43.1% of PF07119, 28.3 bits

• Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20
  Shahbaaz, PloS one 2013
  • “...gated chloride channel 99. HP HI0638 950538 P44796 High frequency lysogenization protein HflD 100. HP HI0650 949696 P44028 Prokaryotic membrane lipoprotein lipid attachment site profile protein 101. HP HI0656 950161 P44807 tRNAthreonylcarbamoyladenosine biosynthesis protein RimN 102. HP HI0656.1 949423 P46494 Topoisomerase DNA binding C4 zinc finger...”
• Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20
  Shahbaaz, PloS one 2013
  • “...channel 99. HP HI0638 950538 P44796 High frequency lysogenization protein HflD 100. HP HI0650 949696 P44028 Prokaryotic membrane lipoprotein lipid attachment site profile protein 101. HP HI0656 950161 P44807 tRNAthreonylcarbamoyladenosine biosynthesis protein RimN 102. HP HI0656.1 949423 P46494 Topoisomerase DNA binding C4 zinc finger 103. HP...”

Or search for genetic data about PF07119 in the Fitness Browser