Family Search for PF07120 (DUF1376)

PF07120.11 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

XF1664 hypothetical protein (NCBI ptt file) from Xylella fastidiosa 9a5c
Aligns to 8:92 / 108 (78.7%), covers 98.9% of PF07120, 111.9 bits

• DNA microarray-based genome comparison of a pathogenic and a nonpathogenic strain of Xylella fastidiosa delineates genes important for bacterial virulence
  Koide, Journal of bacteriology 2004
  • “...XF1250, XF1306, XF1581, XF1588, XF1589, XF1646, XF1663, XF1664, XF1686, XF1708, XF1709, XF1860, XF1863, XF1874, XF1877, XF1878, XF1884, XF1968, XF2193, XF2195,...”
  • “...protein XF1609 .................Glucose/galactose transporter XF1664 .................Hypothetical protein XF1746 .................Alcohol dehydrogenase XF1756...”

YdaU / b1359 Rac prophage; DUF1376 domain-containing protein YdaU from Escherichia coli K-12 substr. MG1655 (see 2 papers)
P76065 Uncharacterized protein YdaU from Escherichia coli (strain K12)
b1359 Rac prophage; conserved protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 22:105 / 285 (29.5%), covers 98.9% of PF07120, 94.4 bits

• EFG1 Mutations, Phenotypic Switching, and Colonization by Clinical a/α Strains of Candida albicans
  Park, mSphere 2020
  • “...BSI USA I EFG1 / EFG1 5 P48086 BSI USA I EFG1 / EFG1 6 P76065 BSI USA I EFG1 / EFG1 7 P22078 BSI UK SA EFG1 / EFG1 8 P75071 BSI Italy SA (4) EFG1 / EFG1 9 P80004 BSI USA SA (4) EFG1...”
  • “...sections. Switching by EFG1/EFG1 isolates. Of the 17 clinical isolates that were EFG1/EFG1 , four (P76065, P57096, 1298wh, and P37009) underwent switching from white to opaque on GlcNAc-agar under one or more sets of environmental conditions ( Fig.2B and TableS3 ). P76065 switched to opaque at...”
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• Phenotypic screening of Escherichia coli K-12 Tn5 insertion libraries, using whole-genome oligonucleotide microarrays
  Winterberg, Applied and environmental microbiology 2005
  • “...microarray analysis of these Gene Global studya b1238 b1269 b1359 b1463 b1471 b1765 b1874 b1961 b2163 b3134 b3219 b3863 tdk yciL ydaU nhoA yddk ydjA cutC dcm...”
• Identification and mapping of self-assembling protein domains encoded by the Escherichia coli K-12 genome by use of lambda repressor fusions
  Mariño-Ramírez, Journal of bacteriology 2004
  • “...ytfL b0866 b0897 b0906 b1011 b1067 b1253 b1284 b1299 b1359 b1547 b1606 b1669 b1800 b1853 b1834 b1970 b2007 b2101 b2157 b2160 b2245 b2249 b2291 b2294 b2355 b2360...”

WP_054529722 DUF1376 domain-containing protein from Erythrobacter sp. SG61-1L
Aligns to 5:92 / 274 (32.1%), covers 96.6% of PF07120, 51.2 bits

• Isolation and characterization of the first phage infecting ecologically important marine bacteria Erythrobacter
  Lu, Virology journal 2017
  • “...ST904 WP_054436273 39 3.00E-23 29 - 12,867 13,688 822 273 hypothetical protein Erythrobacter sp. SG61-1L WP_054529722 40 3.00E-10 30 - 13,961 14,176 216 71 hypothetical protein None n/a n/a n/a 31 - 14,173 14,859 687 228 hypothetical protein Lactobacillus phage LL-H YP_001285924 43 1.00E-18 32 -...”

BH14490 hypothetical protein (NCBI) from Bartonella henselae str. Houston-1
Aligns to 1:71 / 309 (23.0%), covers 77.0% of PF07120, 41.4 bits

• Gene Transfer Agent Promotes Evolvability within the Fittest Subpopulation of a Bacterial Pathogen
  Québatte, Cell systems 2017
  • “...bp-long intergenic sequence as well as a 338-bp-long segment spanning the 5portion of the gene BH14490 (renamed brrC , for Bartonella ROR) ( Table S6 ). Previous estimates on the ROR location based on sequence conservation have also linked brrC with the site of ROR replication...”
  • “...single maximum for the insertion ratio was obtained for the intergenic region between BH14480 and BH14490 pinpointing to the ROR origin of the GTA system. Essentiality Analysis and Calculation of Donor Transfer Z-score and Recipient Uptake Z-score The metrics and statistical analysis for classification of protein...”

Lferr_1276 hypothetical protein (RefSeq) from Acidithiobacillus ferrooxidans ATCC 53993
Aligns to 1:90 / 302 (29.8%), covers 93.1% of PF07120, 32.8 bits

• Acidithiobacillus thiooxidans secretome containing a newly described lipoprotein Licanantase enhances chalcopyrite bioleaching rate
  Bobadilla, Applied microbiology and biotechnology 2011
  • “...proteins are highlighted with arrows and numerated according to: 1 Licanantase lipoprotein; 3 hypothetical protein Lferr_1276; 4 glyceraldehyde-3-phosphate dehydrogenase; 5 protein TolA; 6 pentapeptide repeat-containing protein, IcmE; 7 hypothetical protein Lferr_1859; 8 3-isopropylmalate dehydratase, large subunit; 9 , 10 phosphate-selective porin O and P Characterization of...”
  • “...3.0 Server) SignalP Prediction: signal peptide probability0.996 (K)ANAAQSTADQAmSTANSANQK(A) Signal anchor probability0.001. 3 YP_002219721.1| hypothetical protein Lferr_1276 [ Acidithiobacillus ferrooxidans ATCC 53993] 9.1 33.4 (R)TAQEYR(S) 100 Non-classically secreted protein (Secretome 2.0 Server) (R)EDNDPRAKDR(E) 4 YP_002514952.1| glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) [ Thioalkalivibrio sp. HL-EbGR7] 6.2 35.7 (K)TVDGPSAKDWR(G) 100 (TatP...”

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