Family Search for PF07151 (DUF1391)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF07151 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
YdaF / b4527 Rac prophage; DUF1391 domain-containing protein YdaF from Escherichia coli K-12 substr. MG1655
ECs1939 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 2:49 / 51 (94.1%), covers 100.0% of PF07151, 136.9 bits
- Genome evolution in major Escherichia coli O157:H7 lineages
Zhang, BMC genomics 2007 - “...exclusion protein; sieB 100% 0% 0% Sp10 ECs1938 4 hypothetical protein 87% 0% 0% Sp10 ECs1939 (Z2403) hypothetical protein, ydfA 100% 0% 0% S-loop#91 (in Sp10) ECs1941 (Z2400) putative transcriptional regulator 100% 0% 0% S-loop#91 (in Sp10) ECs1942 (Z2399) regulatory protein 100% 0% 0% S-loop#92 (in...”
STY2067 conserved hypothetical protein from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 2:49 / 51 (94.1%), covers 95.8% of PF07151, 121.2 bits
UTI89_C1465 hypothetical protein YdfA from Escherichia coli UTI89
Aligns to 29:76 / 78 (61.5%), covers 93.8% of PF07151, 115.4 bits
- High-throughput sequencing of sorted expression libraries reveals inhibitors of bacterial cell division
Mediati, BMC genomics 2018 - “...10,266.0 UTI89_C1460 S UTI89_C1461 dicB D UTI89_C1462 dicF RD UTI89_C1463 ydfC S UTI89_C1464 ydfB S UTI89_C1465 ydfA S UTI89_C1466 dicA KT UTI89_C1467 dicC R 1,961,2911,963,326 UTI89_C2055 zwf G 2036 19.0 1044.3 2,011,0102,012,850 UTI89_C2102 (yecI/ftnB) P 1841 6.7 159.7 UTI89_C2103 yecJ S UTI89_C2104 S UTI89_C2105 yecR SR...”
Z1769 unknown protein encoded by prophage CP-933N from Escherichia coli O157:H7 EDL933
Aligns to 28:75 / 76 (63.2%), covers 91.7% of PF07151, 114.4 bits
- Comparative genomics analysis and characterization of Shiga toxin-producing Escherichia coli O157:H7 strains reveal virulence genes, resistance genes, prophages and plasmids
Naidoo, BMC genomics 2023 - “...Z866, Z869, Z885, Z887, Z892, Z903, Z910, Z1486, Z1504, Z1615, Z1626, Z1723, Z1766, Z1767, Z1768, Z1769, Z1811, Z1812, Z1813, Z1814, Z1815, Z1816, Z1825, Z1826, Z1830, Z1831, Z1832, Z1833, Z1834, Z1835, Z1836. The number or virulence genes present ranged from 15 to 46. The number or pathogen...”
- “...and 6 incomplete) and percentage GC of 50.50%. Fourteen strains (Z852, Z903, Z1626, Z1766, Z1768, Z1769, Z1812, Z1815, Z1816, Z1825, Z1830, Z1831, Z1832 and Z1833) had 21 prophages (13 intact, 5 questionable and 3 incomplete) and percentage GC of 50.53%. The results for the PHASTER analysis...”
YdfA / b1571 Qin prophage; DUF1391 domain-containing protein YdfA from Escherichia coli K-12 substr. MG1655 (see paper)
Z1331 unknown protein encoded by cryptic prophage CP-933M from Escherichia coli O157:H7 EDL933
b1571 Qin prophage; predicted protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 2:49 / 51 (94.1%), covers 93.8% of PF07151, 114.2 bits
- The Mobilizable Plasmid P3 of Salmonella enterica Serovar Typhimurium SL1344 Depends on the P2 Plasmid for Conjugative Transfer into a Broad Range of Bacteria In Vitro and In Vivo
Gaissmaier, Journal of bacteriology 2022 - “...of feces and cecal content for the next 3days. Transconjugants were detected in E. coli Z1331, H. alvei , C. braakii , and Y. enterocolitica ( Fig. 2a , b , c , and e , respectively). No transconjugants were detected in K. michiganensis ( Fig....”
- “...strain S . Typhimurium SL1344 on day 1. The tested recipients are (a) E. coli Z1331 WITS1 Amp r lac + ( n =6) (b) H. alvei /pM965 (Amp r )/pACYC184 (Cm r ) ( n =5), (d) K. michiganensis (Amp r lac + ) (...”
- The mobilizable plasmid P3 of Salmonella enterica serovar Typhimurium SL1344 depends on the P2 plasmid for conjugative transfer into a broad range of bacteria in vitro and in vivo
Gaissmaier, 2022 - Novel two-component transmembrane transcription control: regulation of iron dicitrate transport in Escherichia coli K-12
Van, Journal of bacteriology 1990 - “...chromosomal BglII frag- Strain or plasmid Strains AB2847 WM1576 Z1331 Z1332 Z1333 Z1335 Z1337 Z1778 VH26 VH27 VH28 VH32 VH29 VH33 VH53 VH55 Z1418 VH20 VH21 VH63...”
- “...dl(Ap lac) As AB2847 but lac::TnJOfecI::Mu dl(Ap lac) As Z1331 but fepA Z1333(pBV25) Z1333(pMc2-54) Source or reference 39 41 32 32 32 32 32 This This This...”
- Genetics of the iron dicitrate transport system of Escherichia coli
Pressler, Journal of bacteriology 1988 - “...E. coli K-12 H1443 Z1367 H799 Z1418 Z1314 Z1640 Z1331 Z1332 Z1333 Z1335 ZI337 Z1334 Z1336 Z1338 Z1379 Z1381 CR63 DS410 Z1813 Z1814 Z1815 Z1816 Z1817 Genotype'...”
- “...(lane 2), E. coli K-12 AB2847 (lane 3), and Z1331 (lane 4), digested with PstI, and separated on agarose gels. (C) 35S-labeled 0.6-kb BamHI-PstI fragment of...”
- 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
, Haematologica 2013 - luxS-dependent gene regulation in Escherichia coli K-12 revealed by genomic expression profiling
Wang, Journal of bacteriology 2005 - “...b0790 b1720 b1010 b2797 b2993 b0042 b1001 b2549 b1311 b3141 b1012 b1571 lsrG lsrD lsrA lsrB metE lsrF lsrK yneE yfaE tam yjhR lsrR lsrC gpmB argX ileT arpA gatR...”
c1409 Hypothetical protein ydfA from Escherichia coli CFT073
Aligns to 29:76 / 78 (61.5%), covers 93.8% of PF07151, 104.4 bits
Or search for genetic data about PF07151 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory