PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF07166 (DUF1398)

PF07166.11 hits 14 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

t1022 conserved hypothetical protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 8:126 / 131 (90.8%), covers 100.0% of PF07166, 155.7 bits

STMMW_18451 DUF1398 domain-containing protein from Salmonella enterica subsp. enterica serovar Typhimurium str. D23580
STM1856 putative cytoplasmic protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 8:126 / 131 (90.8%), covers 100.0% of PF07166, 155.3 bits

YcgX / b1161 DUF1398 domain-containing protein YcgX from Escherichia coli K-12 substr. MG1655
b1161 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 8:126 / 134 (88.8%), covers 99.2% of PF07166, 152.0 bits

c1603 Hypothetical protein ycgX (NCBI ptt file) from Escherichia coli CFT073
Aligns to 8:126 / 134 (88.8%), covers 99.2% of PF07166, 150.6 bits

YdfO / b1549 Qin prophage; DUF1398 domain-containing protein YdfO from Escherichia coli K-12 substr. MG1655
b1549 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 8:126 / 136 (87.5%), covers 99.2% of PF07166, 149.4 bits

c1440 Hypothetical protein ydfO (NCBI ptt file) from Escherichia coli CFT073
Aligns to 13:131 / 141 (84.4%), covers 100.0% of PF07166, 149.1 bits

YbcV / b0558 DLP12 prophage; DUF1398 domain-containing protein YbcV from Escherichia coli K-12 substr. MG1655 (see paper)
ECK0550 DLP12 prophage; protein YbcV from Escherichia coli str. K-12 substr. MG1655
b0558 putative an envelop protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
SR35_02760 DUF1398 domain-containing protein from Escherichia coli
Aligns to 8:126 / 136 (87.5%), covers 99.2% of PF07166, 148.8 bits

NP_597781 putative envelope protein (NCBI) from Enterobacteria phage lambda
NP_597781 putative envelope protein from Escherichia virus Lambda
Aligns to 49:167 / 177 (67.2%), covers 99.2% of PF07166, 148.4 bits

EC1303_c12530 DUF1398 family protein from Escherichia coli 1303
Aligns to 8:126 / 136 (87.5%), covers 99.2% of PF07166, 140.9 bits

MW0324 conserved hypothetical protein (NCBI ptt file) from Staphylococcus aureus subsp. aureus MW2
Aligns to 9:126 / 129 (91.5%), covers 95.0% of PF07166, 95.6 bits

SAUSA300_0349 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus USA300_FPR3757
USA300HOU_0369 possible bacteriophage envelope protein (RefSeq) from Staphylococcus aureus subsp. aureus USA300_TCH1516
SATW20_04160 DUF1398 family protein from Staphylococcus aureus subsp. aureus TW20
Aligns to 9:126 / 129 (91.5%), covers 95.0% of PF07166, 94.3 bits

SAV0348 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus Mu50
SA0336 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus N315
Aligns to 9:126 / 129 (91.5%), covers 95.0% of PF07166, 93.6 bits

LMOf2365_0649 hypothetical protein (NCBI) from Listeria monocytogenes str. 4b F2365
Aligns to 8:126 / 130 (91.5%), covers 97.5% of PF07166, 88.6 bits

Rv2012 hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
Aligns to 35:151 / 164 (71.3%), covers 86.6% of PF07166, 38.5 bits

Or search for genetic data about PF07166 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory