Family Search for PF07208 (DUF1414)

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PF07208 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

t0627 conserved hypothetical protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
STM2227 putative cytoplasmic protein from Salmonella typhimurium LT2
STM14_2753, T_RS03175 YejL family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Aligns to 26:69 / 75 (58.7%), covers 100.0% of PF07208, 88.0 bits

• Salmonella Typhi Colonization Provokes Extensive Transcriptional Changes Aimed at Evading Host Mucosal Immune Defense During Early Infection of Human Intestinal Tissue
  Nickerson, EBioMedicine 2018
  • “...protein T_RS03955 t0785 2.27 0.0004 Transporter T_RS16250 t3205 2.27 0.0004 Transcription termination protein NusA T_RS03175 t0627 2.26 0.0004 Hypothetical protein T_RS14120 t2783 (iacP) 2.23 0.0004 Acyl carrier protein T_RS12185 t2397 2.22 0.0004 Nitrogen regulatory protein P-II 2 T_RS03945 t0784 2.21 0.0004 CDP-paratose 2-epimerase T_RS03950 t0783 2.21...”
• Inorganic Polyphosphate Is Essential for Salmonella Typhimurium Virulence and Survival in Dictyostelium discoideum
  Varas, Frontiers in cellular and infection microbiology 2018
  • “...hns Global DNA-binding transcriptional dual regulator H-NS STM14_2516 STM2028 cbiG Cobalamin biosynthesis protein CbiG STM14_2753 STM2227 yejL Hypothetical protein STM14_3634 STM3010 aas Bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase STM14_3771 STM3122 Putative arylsulfatase STM14_3899 STM3220 ygjO Putative methyltransferase STM14_3969 STM3286 infB Translation initiation factor IF-2 STM14_4016 STM3328...”
• Genomic comparisons of Salmonella enterica serovar Dublin, Agona, and Typhimurium strains recently isolated from milk filters and bovine samples from Ireland, using a Salmonella microarray
  Reen, Applied and environmental microbiology 2005
  • “...DNA fragments (STM0557 to STM0586, STM2391 to STM2425, STM2227 to STM2247, and STM4301 to STM4324) containing genes known to be virulence factors that displayed...”
• Genome-Wide Identification and Expression Analysis of SOS Response Genes in Salmonella enterica Serovar Typhimurium
  Mérida-Floriano, Cells 2021
  • “...19 5.26 STM14_2752 yejK 4.54 1 102 20.89 STM14_2422 umuC ** 3.91 1 -- 4.38 STM14_2753 yejL 3.74 1 57 20.89 STM14_2648 thiM 3.62 1 177 18.02 STM14_3627 mutH 3.58 1 228 12.99 STM14_2551 sbmC 3.55 1 21 6.32 STM14_1492 msgA 3.44 1 14 11.88 STM14_2650...”
• Inorganic Polyphosphate Is Essential for Salmonella Typhimurium Virulence and Survival in Dictyostelium discoideum
  Varas, Frontiers in cellular and infection microbiology 2018
  • “...STM1751 hns Global DNA-binding transcriptional dual regulator H-NS STM14_2516 STM2028 cbiG Cobalamin biosynthesis protein CbiG STM14_2753 STM2227 yejL Hypothetical protein STM14_3634 STM3010 aas Bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase STM14_3771 STM3122 Putative arylsulfatase STM14_3899 STM3220 ygjO Putative methyltransferase STM14_3969 STM3286 infB Translation initiation factor IF-2 STM14_4016...”
• Salmonella Typhi Colonization Provokes Extensive Transcriptional Changes Aimed at Evading Host Mucosal Immune Defense During Early Infection of Human Intestinal Tissue
  Nickerson, EBioMedicine 2018
  • “...Hypothetical protein T_RS03955 t0785 2.27 0.0004 Transporter T_RS16250 t3205 2.27 0.0004 Transcription termination protein NusA T_RS03175 t0627 2.26 0.0004 Hypothetical protein T_RS14120 t2783 (iacP) 2.23 0.0004 Acyl carrier protein T_RS12185 t2397 2.22 0.0004 Nitrogen regulatory protein P-II 2 T_RS03945 t0784 2.21 0.0004 CDP-paratose 2-epimerase T_RS03950 t0783...”

SFV_2265 hypothetical protein from Shigella flexneri 5 str. 8401
Aligns to 26:69 / 75 (58.7%), covers 100.0% of PF07208, 87.4 bits

• Shigella flexneri serotype 1c derived from serotype 1a by acquisition of gtrIC gene cluster via a bacteriophage
  Tang, BMC microbiology 2016
  • “...(100%) 75/75 (100%) 5e-46 Hypothetical protein S2403(75aa) Shigella flexneri 2a str. 2457T (NP_837801.1) Hypothetical protein SFV_2265 (75aa) Shigella flexneri 5 str. 8401 (YP_689686.1) orf 5 (yejM) 761..2521 1761 586 (2 domains detected) yejM gene product (586aa) Shigella flexneri 2a str. 301(NP_708087.1) 586/586 (100%) 586/586 (100%) 0.0...”

YejL / b2187 DUF1414 domain-containing protein YejL from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b2187 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
P0AD24 UPF0352 protein YejL from Escherichia coli (strain K12)
Aligns to 26:69 / 75 (58.7%), covers 100.0% of PF07208, 87.0 bits

• The Gene Expression Profile of Uropathogenic Escherichia coli in Women with Uncomplicated Urinary Tract Infections Is Recapitulated in the Mouse Model
  Frick-Cheng, mBio 2020
  • “...2.1 b1705 yecJ DUF2766 domain-containing protein YecJ 2.5 b4537 yejL DUF1414 domain-containing protein YejL 2.2 b2187 yfaZ Putative porin YfaZ 2.9 b2250 yfhL Putative 4Fe-4S cluster-containing protein YfhL 2.6 b2562 yghD Putative type II secretion system M-type protein 3.6 b2968 yghG Lipoprotein YghG 3.3 b2971 yifK...”
• Label-free quantitative proteomic analysis of the inhibition effect of Lactobacillus rhamnosus GG on Escherichia coli biofilm formation in co-culture
  Song, Proteome science 2021
  • “...value Log2FC Protein description bamE P0A937 9.90E-04 0.90 Outer membrane protein assembly factor BamE yejL P0AD24 1.29E-03 3.09 UPF0352 protein YejL rpsN P0AG59 2.60E-03 2.17 30S ribosomal protein S14 gpmA P62707 4.76E-03 0.52 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase dnaK P0A6Y8 9.35E-03 0.27 Chaperone protein DnaK sohB P0AG14 1.43E-02...”

YPO1261 conserved hypothetical protein from Yersinia pestis CO92
YPTB1297 hypothetical protein from Yersinia pseudotuberculosis IP 32953
Aligns to 26:69 / 75 (58.7%), covers 100.0% of PF07208, 84.0 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...YPTB1222 YPO1181 putative membrane protein 0.697 (0.032) YPTB1227 YPO1186 conserved hypothetical protein 0.634 (0.005) YPTB1297 YPO1261 conserved hypothetical protein 0.659 (0.014) YPTB1387 YPO1361 putative membrane protein 1.593 (0.003) YPTB1389 YPO1363 putative virulence factoR 0.632 (0.043) YPTB1422 YPO1397 conserved hypothetical protein (pseudogene. inframe deletion) 1.803 (0.012) YPTB1432...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...(0.047) YPTB1222 YPO1181 putative membrane protein 0.697 (0.032) YPTB1227 YPO1186 conserved hypothetical protein 0.634 (0.005) YPTB1297 YPO1261 conserved hypothetical protein 0.659 (0.014) YPTB1387 YPO1361 putative membrane protein 1.593 (0.003) YPTB1389 YPO1363 putative virulence factoR 0.632 (0.043) YPTB1422 YPO1397 conserved hypothetical protein (pseudogene. inframe deletion) 1.803 (0.012)...”

SO_2176 YejL family protein from Shewanella oneidensis MR-1
Q8EF26 UPF0352 protein SO_2176 from Shewanella oneidensis (strain MR-1)
SO2176 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 26:69 / 72 (61.1%), covers 100.0% of PF07208, 82.0 bits

• Mixed-isotope labeling with LC-IMS-MS for characterization of protein-protein interactions by chemical cross-linking
  Merkley, Journal of the American Society for Mass Spectrometry 2013
  • “...homodimeric proteins (SrfN from Salmonella enterica subsp. enterica serovar Typhimurium [9.2 kDa per monomer] and SO_2176 from Shewanella oneidensis [8.9 kDa per monomer]) and compare the results with those obtained with no IMS separation. The results illustrate that the additional IMS separation provides improved specificity and...”
  • “...- 14 ]. A purified, 1:1 mixture of unlabeled and uniformly 13 C, 15 N-labeled SO_2176 protein also was supplied by NESG (target SoR77). The plasmid construct for SrfN was provided by the Northeast Structural Genomics Consortium (NESG); SrfN is NESG target StR109. A mixture of...”
• A community resource of experimental data for NMR / X-ray crystal structure pairs.
  Everett, Protein science : a publication of the Protein Society 2016
• Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysis
  Romine, Omics : a journal of integrative biology 2004 (PubMed)
  • “...hypotheticals SO2669 and SO2063, conserved hypotheticals SO0335 and SO2176, and the SlyX protein (SO1063) were observed at frequencies similar to those from...”
  • “...SO1288 SO1479 SO1648 58 66 70 71 71 69 SO1855 SO2063 SO2176 SO2301 SO2439.2 58 66 72 64 87 SO2625 SO2669 SO2780 SO2787 72 64 56 69 SO2800 SO2974.1 SO3426...”

PM1884 unknown from Pasteurella multocida subsp. multocida str. Pm70
Aligns to 26:69 / 74 (59.5%), covers 100.0% of PF07208, 70.6 bits

• Transcriptional response of Pasteurella multocida to defined iron sources
  Paustian, Journal of bacteriology 2002
  • “...hemoglobin. Genes encoding the hypothetical proteins PM1880 to PM1884 were expressed at 2.3-fold elevated levels when hemoglobin was added to the medium. Genes...”

Q481E4 UPF0352 protein CPS_2611 from Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
CPS_2611 hypothetical protein from Colwellia psychrerythraea 34H
Aligns to 26:68 / 68 (63.2%), covers 93.2% of PF07208, 58.0 bits

• A community resource of experimental data for NMR / X-ray crystal structure pairs.
  Everett, Protein science : a publication of the Protein Society 2016
• The crystal structure of the AF2331 protein from Archaeoglobus fulgidus DSM 4304 forms an unusual interdigitated dimer with a new type of alpha + beta fold
  Wang, Protein science : a publication of the Protein Society 2009
  • “...PL8 Pollen allergen Phl p 7 UPF0352 protein CPS_2611 Cyanovirin-n Putative NTP pyrophosphohydrolase Plant ATG12 Rank Protein ces rather than b-strands, such as...”

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