PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF07208 (DUF1414)

PF07208.11 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

STM2227 putative cytoplasmic protein (NCBI ptt file) from Salmonella typhimurium LT2
t0627 conserved hypothetical protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi Ty2
STM14_2753, T_RS03175 YejL family protein from Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Aligns to 26:69 / 75 (58.7%), covers 100.0% of PF07208, 87.0 bits

SFV_2265 hypothetical protein (NCBI) from Shigella flexneri 5 str. 8401
Aligns to 26:69 / 75 (58.7%), covers 100.0% of PF07208, 86.1 bits

YejL / b2187 DUF1414 domain-containing protein YejL from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b2187 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 26:69 / 75 (58.7%), covers 100.0% of PF07208, 85.9 bits

YPTB1297 hypothetical protein (NCBI) from Yersinia pseudotuberculosis IP 32953
YPO1261 conserved hypothetical protein (NCBI ptt file) from Yersinia pestis CO92
Aligns to 26:69 / 75 (58.7%), covers 100.0% of PF07208, 83.0 bits

SO2176 conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1
Q8EF26 UPF0352 protein SO_2176 from Shewanella oneidensis (strain MR-1)
SO_2176 YejL family protein from Shewanella oneidensis MR-1
Aligns to 26:69 / 72 (61.1%), covers 100.0% of PF07208, 82.3 bits

PM1884 unknown (NCBI ptt file) from Pasteurella multocida subsp. multocida str. Pm70
Aligns to 26:69 / 74 (59.5%), covers 100.0% of PF07208, 77.3 bits

Q481E4 UPF0352 protein CPS_2611 from Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
CPS_2611 hypothetical protein (NCBI) from Colwellia psychrerythraea 34H
Aligns to 26:68 / 68 (63.2%), covers 90.9% of PF07208, 63.6 bits

Or search for genetic data about PF07208 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory