Family Search for PF07214 (DUF1418)

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PF07214 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

STM0873 putative inner membrane protein from Salmonella typhimurium LT2
Aligns to 1:94 / 96 (97.9%), covers 100.0% of PF07214, 153.5 bits

• Differential gene expression by RamA in ciprofloxacin-resistant Salmonella Typhimurium
  Zheng, PloS one 2011
  • “...family, acridine efflux pump 1.98E-15 acrB 3.1 STM3276 a putative alkanal monooxygenase 1.54E-12 yhbW -3.0 STM0873 putative inner membrane protein 2.95E-13 ybjC 2.9 STM3186 a, b outer membrane channel specific tolerance to colicin 7.89E-15 tolC -2.8 STM3313 putative ABC superfamily (atp_bind) transport protein 1.58E-15 yrbF 2.5...”

YPO1328 putative membrane protein from Yersinia pestis CO92
YPTB1359 putative membrane protein from Yersinia pseudotuberculosis IP 32953
Aligns to 1:98 / 104 (94.2%), covers 98.9% of PF07214, 144.6 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...1.754 (0.008) YPTB1334 (psaA) YPO1303 pH 6 antigen precursor (antigen 4) (adhesin) (< 0.001) YPTB1359 YPO1328 putative membrane protein 1.723 (0.003) YPTB1515 YPO1499 putative membrane protein 1.521 (0.045) YPTB1543 (ysuH) YPO1531 putative siderophore biosynthetic enzyme 1.896 (0.02) YPTB1583 YPO1574 putative exported protein 0.605 (< 0.001) YPTB1602...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...protein 1.754 (0.008) YPTB1334 (psaA) YPO1303 pH 6 antigen precursor (antigen 4) (adhesin) (< 0.001) YPTB1359 YPO1328 putative membrane protein 1.723 (0.003) YPTB1515 YPO1499 putative membrane protein 1.521 (0.045) YPTB1543 (ysuH) YPO1531 putative siderophore biosynthetic enzyme 1.896 (0.02) YPTB1583 YPO1574 putative exported protein 0.605 (< 0.001)...”

Z1077 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 1:93 / 95 (97.9%), covers 98.9% of PF07214, 144.1 bits

• Role of the 5' end phosphorylation state for small RNA stability and target RNA regulation in bacteria
  Schilder, Nucleic acids research 2023
  • “...3.81.3 5P SroC >16 GcvB 3.80.9 GlmZ- gfp GcvB >16 Fig. S11 E. coli rppH (Z1077) 5PPP SroC >16 GcvB 4.70.3 5P SroC >16 GcvB 6.51.9 GlmZ- gfp GcvB >16 The weak regulatory strength of 5P-MicC is not caused by imprecise cleavage of the glmZ-micC fusion...”

YbjC / b0850 DUF1418 domain-containing protein YbjC from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b0850 predicted inner membrane protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:93 / 95 (97.9%), covers 98.9% of PF07214, 143.6 bits

• Effects of Kasugamycin on the Translatome of Escherichia coli
  Lange, PloS one 2017
  • “...GGGT GAGG b3958 argC 2,74 118 118 4 no T G A AT AG C b0850 ybjC 3,07 21 21 7 yes T GCA GAGG b2208 napF 3,61 77 77 6 yes G A T GGA A G b3321 rpsJ 3,79 20 20 5 no G...”
• Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damage
  Royce, PloS one 2014
  • “...0.219 2.6 AR2 TR b2924 mscS 0.001 0.028 2.4 IMP mechanosensitive (MS) channel; non-specific transporter b0850 ybjC 0.003 0.011 2.4 marA/SoxS induced b3024 ygiW 0.004 0.014 2.4 IMP transporter, SR b0775 (c0855) bioB 0.018 0.193 2.3 SAM-dependent biotin synthase b2425 cysP 0.020 0.105 2.2 IMP Sulfate...”
• Membrane stresses induced by overproduction of free fatty acids in Escherichia coli
  Lennen, Applied and environmental microbiology 2011
  • “...MarA/Rob/SoxS regulon b0447 b0463 b0578 b0683 b0684 b0819 b0850 b0851 b0852 b0853 b0871 b0950 b0951 b1014 b1053 b1101 b1277 b1530 b1531 b1532 b1611 b1852...”
• Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli
  Boysen, The Journal of biological chemistry 2010
  • “...target genes gpmA b0755 Phosphoglyceromutase 1 ybjC b0850 Predicted inner membrane protein ybjB b0851 Modulator of drug activity b0886 Predicted inner...”
  • “...0.007 0.044 0.047 0.036 0.002 0.025 0.036 ybjC ybjB b0850 b0851 Predicted inner membrane protein Modulator of drug activity -2.88 -2.48 0.004 0.020 1.37 1.35...”
• Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate
  Pomposiello, Journal of bacteriology 2001
  • “...b3318 b3312 b3314 b3321 b3316 b0724 b3908 b4062 b0729 b3708 b0850 b2523 b3520 b4217 b1852 acrA ahpC aldA artI artP b0710 b1378 b1452 b2351 b2962 cadA cadC ccmD...”
  • “...Gene type Gene Ratio Description b0958 b1004 b0707 b0719 b0850 b1003 b1198 b2597 b2946 b3160 b3516 b3555 b4367 b4378 b3098 sulA wrbA ybgA ybgD ybjC yccJ ycgC...”

YE1481 hypothetical protein from Yersinia enterocolitica subsp. enterocolitica 8081
Aligns to 1:101 / 102 (99.0%), covers 96.8% of PF07214, 130.9 bits

• Comparison of siderophore production and utilization in pathogenic and environmental isolates of Yersinia enterocolitica
  Chambers, Journal of clinical microbiology 1994
  • “...(0:4) YE1500 (0:4) YE1171 (0:4,33) UC310 (0:8) YE420 (0:8) YE1481 (0:8) YE1472 (0:9) YE748 (0:21) Source Human Human Human Human Raw milk Human Swine Human...”

Or search for genetic data about PF07214 in the Fitness Browser