Family Search for PF07226 (DUF1422)

PF07226 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YijD / b3964 DUF1422 domain-containing inner membrane protein YijD from Escherichia coli K-12 substr. MG1655 (see 2 papers)
YIJD_ECOLI / P0AF40 Inner membrane protein YijD from Escherichia coli (strain K12) (see 2 papers)
b3964 conserved inner membrane protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 2:115 / 119 (95.8%), covers 98.2% of PF07226, 178.6 bits

• disruption phenotype: No alteration in fatty acid composition.
• Human body temperature (37degrees C) increases the expression of iron, carbohydrate, and amino acid utilization genes in Escherichia coli K-12
  White-Ziegler, Journal of bacteriology 2007
  • “...b2702 b2703 b0556 b0557 b1495 b1919 b2670 b3217 b3964 b4326 b0458 b1147 Change (n-fold) at 37/23Cc Putative ABC transport system ATP-binding protein Putative...”

YPO3912 putative membrane protein from Yersinia pestis CO92
YPTB0123 putative membrane protein from Yersinia pseudotuberculosis IP 32953
Aligns to 3:116 / 135 (84.4%), covers 98.2% of PF07226, 172.0 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...1.623 (0.025) 0.434 (< 0.001) YPTB0094 YPO0102 putative exported protein 0.503 (< 0.001) YPTB0123 (yijD) YPO3912 putative membrane protein 0.669 (0.033) YPTB0139 YPO3895 putative membrane protein 0.717 (0.036) YPTB0141 YPTB0141 putative membrane protein 1.774 (0.026) YPTB0148 or0096 colicin (pseudogene. partial) 1.493 (0.013) YPTB0149 or0097 putative colicin...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...hypothetical protein 1.623 (0.025) 0.434 (< 0.001) YPTB0094 YPO0102 putative exported protein 0.503 (< 0.001) YPTB0123 (yijD) YPO3912 putative membrane protein 0.669 (0.033) YPTB0139 YPO3895 putative membrane protein 0.717 (0.036) YPTB0141 YPTB0141 putative membrane protein 1.774 (0.026) YPTB0148 or0096 colicin (pseudogene. partial) 1.493 (0.013) YPTB0149 or0097...”

VC0153 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 8:121 / 123 (92.7%), covers 97.4% of PF07226, 169.6 bits

• Whole-Genome Analysis of Clinical Vibrio cholerae O1 in Kolkata, India, and Dhaka, Bangladesh, Reveals Two Lineages of Circulating Strains, Indicating Variation in Genomic Attributes
  Morita, mBio 2020
  • “...lineage 2 (BGD101, BGD102, IND036, and IND040) possessed the 18.2-kb GI at the site between VC0153 and VC0154, which shared the 11 ORFs of VSP-II ( Fig.S3 ). The sequence revealed 97% similarity with Vibrio anguillarum VIB43 (CK207_00770 to CK207_00865 of DDBJ/EMBL/GenBank accession number CP023054 )...”
  • “...). This thus represents the first report of the discovery of the novel GI at VC0153 to VC0154 in V. cholerae O1 strains. 10.1128/mBio.01227-20.6 FIGS3 Schematic diagram of the novel GI at VC0153 to VC0154 in Bengali V. cholerae O1 and VSP-II in V. cholerae O1...”
• Analysis of Vibrio seventh pandemic island II and novel genomic islands in relation to attachment sequences among a wide variety of Vibrio cholerae strains
  Nguyen, Microbiology and immunology 2018
  • “...found in the present study. Of these, three GI were integrated at the site between VC0153 and VC0154, and the other three were at the site between VC0208 and VC0209, then designated as GIVC01541, 2, and 3; and GIVC02091, 2, and 3, respectively (Fig. 3 )....”
  • “...novel genomic islands (a) Genetic organizations of three genomic islands inserted at the site between VC0153 and VC0154 were compared. V1, V2 and V3 indicate genomic islands GIVC01541, 2 and 3, respectively. (b) Genetic organizations of three genomic islands inserted at the site between VC0208 and...”

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