Family Search for PF07233 (DUF1425)
PF07233.12 hits 13 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
VP0966 conserved hypothetical protein (NCBI ptt file) from Vibrio parahaemolyticus RIMD 2210633
Aligns to 34:125 / 130 (70.8%), covers 98.9% of PF07233, 102.2 bits
- LptD is a promising vaccine antigen and potential immunotherapeutic target for protection against Vibrio species infection
Zha, Scientific reports 2016 - “...Moreover, our previous study identified several OMPs, LptD, LamB, OmpA, OmpK, OmpU, VP0802, VP1243 and VP0966, to be immunogenic proteins from V. parahaemolyticus using an immunoproteomics approach 19 . Among these proteins, LptD appeared to be a highly immunogenic protein. The structure and function of LptD...”
- “...OMPs. In our previous study, LptD, as well as other three OMPs VP0802, VP1243 and VP0966 with relatively low abundance, were identified as immunogenic proteins for the first time using immunoproteomics from V. parahaemolyticus 19 . These newly identified immunogenic proteins, along with other immunogenic OMPs...”
- Identification of a novel vaccine candidate by immunogenic screening of Vibrio parahaemolyticus outer membrane proteins
Li, Vaccine 2014 (PubMed)- “...low abundance in OMP profiles, LptD, VP0802, VP1243 and VP0966, were determined to have immunogenicity for the first time. One OMP of interest, VP0802, is...”
- “...gi| 28898017 VP1243 19,769 119 10 Hypothetical protein VP0966 gi| 28897740 VP0966 14,723 63 Non-immunogenic proteins 12 Chitoporin gi| 28897534 VP0760 40,764...”
Shew_1734 hypothetical protein (RefSeq) from Shewanella loihica PV-4
Aligns to 33:124 / 129 (71.3%), covers 98.9% of PF07233, 97.4 bits
- Crystal structure of the Campylobacter jejuni Cj0090 protein reveals a novel variant of the immunoglobulin fold among bacterial lipoproteins
Paek, Proteins 2012 - “...with Cj0090. Among these, two bacterial proteins were noteworthy: (1) uncharacterized protein referred to as Shew_1734 (PDB 3o0l; Z score 9.9 and r.m.s.d. 2.3) and (2) ApaG (PDB 1tza; Z score 6 and r.m.s.d. 2.6). Both proteins are similar to Cj0090 in size. The crystal structure...”
- “...the closest structural homolog of the Cj0090 structure. Given low sequence identity between Cj0090 and Shew_1734 (15% identical excluding signal peptide), it was not surprising that BLAST searches failed to identify Shew_1734 as a homolog. Analogous to Cj0090, Shew_1734 is a putative bacterial lipoprotein and contains...”
SPA1645 putative lipoprotein (NCBI) from Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
Aligns to 33:123 / 124 (73.4%), covers 100.0% of PF07233, 92.3 bits
- Identification of in vivo-induced bacterial proteins during human infection with Salmonella enterica serotype Paratyphi A
Alam, Clinical and vaccine immunology : CVI 2013 - “...and adhesion SPA0021 SPA0181 SPA0201 SPA0703 SPA1533 SPA1604 SPA1645 SPA3787 SPA4148 bcfA stkE stfA stcD osmE envE ycfL yifL yjeI Fimbrial subunit Putative...”
- “...the cell envelope and membrane (SPA1533, SPA1604, SPA1645, SPA3787, and SPA4148), energy metabolism and cellular processes (SPA0489, SPA0608, SPA0652, SPA1239,...”
NP_460176 putative outer membrane lipoprotein (NCBI ptt file) from Salmonella typhimurium LT2
SEET0819_12675 YcfL family protein from Salmonella enterica subsp. enterica serovar Tennessee str.
Aligns to 33:123 / 124 (73.4%), covers 100.0% of PF07233, 91.9 bits
c1377 Hypothetical protein ycfL (NCBI ptt file) from Escherichia coli CFT073
Aligns to 34:124 / 125 (72.8%), covers 100.0% of PF07233, 90.9 bits
YcfL / b1104 DUF1425 domain-containing protein YcfL from Escherichia coli K-12 substr. MG1655 (see paper)
b1104 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 34:124 / 125 (72.8%), covers 100.0% of PF07233, 89.8 bits
YPO1612 putative lipoprotein (NCBI ptt file) from Yersinia pestis CO92
YPTB2452 putative lipoprotein (NCBI) from Yersinia pseudotuberculosis IP 32953
Aligns to 38:128 / 129 (70.5%), covers 98.9% of PF07233, 88.3 bits
NJ56_16480 DUF1425 domain-containing protein from Yersinia ruckeri
Aligns to 38:128 / 129 (70.5%), covers 98.9% of PF07233, 82.9 bits
APL_0125 hypothetical protein (NCBI) from Actinobacillus pleuropneumoniae L20
APJL_0126 predicted periplasmic lipoprotein (RefSeq) from Actinobacillus pleuropneumoniae serovar 3 str. JL03
Aligns to 32:121 / 124 (72.6%), covers 82.6% of PF07233, 42.7 bits
NTHI1133 predicted periplasmic lipoprotein (RefSeq) from Haemophilus influenzae 86-028NP
Aligns to 34:116 / 116 (71.6%), covers 76.1% of PF07233, 32.2 bits
Cj0090 putative lipoprotein (NCBI ptt file) from Campylobacter jejuni subsp. jejuni NCTC 11168
YP_002343550 lipoprotein from Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Aligns to 29:119 / 122 (74.6%), covers 78.3% of PF07233, 31.7 bits
- Virulence Traits of Inpatient Campylobacter jejuni Isolates, and a Transcriptomic Approach to Identify Potential Genes Maintaining Intracellular Survival
Kovács, Microorganisms 2020 - “...expression of factors that were recently speculated to be involved in adhesion ( Cj0268 , Cj0090 , Cj0091 , Cj1136 , Cj0286c , Cj0379c , jlpA , capA , cjaA , flpA , fbpA , cadF , peb2 , and peb3) . However, expression of adhesion...”
- “...( jlpA , capA , cjaA , flpA , fbpA , cadF , cj0268 , cj0090 , cj0091 , cj1136 , cj0286c , and cj0379c ) have previously been confirmed or suggested to play a role in C. jejuni adhesion [ 14 , 15 , 16...”
- Campylobacter jejuni 11168H Exposed to Penicillin Forms Persister Cells and Cells With Altered Redox Protein Activity
Morcrette, Frontiers in cellular and infection microbiology 2020 - “...Cj0440c Transcriptional regulator 0.1449 Cj0734c hisJ Histidine-binding protein 3.0803 Cj0234c frr Ribosome recycling factor 0.1472 Cj0090 Lipoprotein 3.0552 Cj1516 Oxidoreductase 0.158 Cj0853c hemL Glutamate-1-semialdehyde aminotransferase 2.8635 Cj0014c Integral membrane protein 0.159 The proteome of these cells was compared to the proteome of a control culture not...”
- Proteomic and genomic analysis reveals novel Campylobacter jejuni outer membrane proteins and potential heterogeneity
Watson, EuPA open proteomics 2014 - “...CJJ81176_0126). Oakland et al. [51] recently characterised homologues of these lipoproteins in strain NCTC11168 (Cj0089, Cj0090, and Cj0091). Few autotransporter proteins are annotated in C. jejuni yet they are common features of Gram-negative bacterial outer membranes. In this study we detected the expression of one putative...”
- Crystal structure of the Campylobacter jejuni Cj0090 protein reveals a novel variant of the immunoglobulin fold among bacterial lipoproteins
Paek, Proteins 2012 - “...Proteins Proteins 0887-3585 1097-0134 22987763 3486952 10.1002/prot.24182 NIHMS409578 Article Crystal structure of the Campylobacter jejuni Cj0090 protein reveals a novel variant of the immunoglobulin fold among bacterial lipoproteins Paek Seonghee Kawai Fumihiro Choi Kyoung-Jae Yeo Hye-Jeong * Department of Biology and Biochemistry, University of Houston, Houston,...”
- “...20 lipoproteins. However, the functions of the majority of C. jejuni lipoproteins remain unknown. The Cj0090 protein is encoded by a lipoprotein operon composed of cj0089, cj0090 , and cj0091 . Here, we report the crystal structure of Cj0090 at 1.9 resolution, revealing a novel variant...”
- Functional characterization of a lipoprotein-encoding operon in Campylobacter jejuni
Oakland, PloS one 2011 - “...the multidrug efflux pump CmeABC, modulates the expression of a three-gene operon ( cj0089 , cj0090 , and cj0091 ) encoding a cluster of lipoproteins in C. jejuni . Methodology/Principal Findings In this work, we characterized the function and regulation of the cj0089 - cj0090 -...”
- “...CmeR-regulated targets were cj0089 and cj0091 encoding putative lipoproteins. cj0089 and cj0091 , along with cj0090 (also encoding a putative lipoprotein) appear to be organized into an operon, but their detailed regulatory mechanisms and the role in Campylobacter pathophysiology remain unknown. Considering the fact that bacterial...”
- Crystal structure of the Campylobacter jejuni Cj0090 protein reveals a novel variant of the immunoglobulin fold among bacterial lipoproteins
Paek, Proteins 2012 - GeneRIF: Here, we report the crystal structure of Campylobacter jejuni Cj0090 at 1.9 A resolution, revealing a novel variant of the immunoglobulin fold with beta-sandwich architecture.
- “...( A ) Sequence alignment of Cj0090 and representative putative lipoproteins: Cj, Campylobacter jejuni (accession#: YP_002343550); Sl, Shewanella loihica (accession#: YP_001093860); Vc, Vibrio cholerae (accession#: NP_231529); Se, Salmonella enterica (accession#: NP_460176); and Ec, Escherichia coli (accession#: NP_287238). The signal peptides are indicated in red box. The...”
CJJ81176_0125 lipoprotein, putative (NCBI) from Campylobacter jejuni subsp. jejuni 81-176
Aligns to 29:119 / 122 (74.6%), covers 78.3% of PF07233, 31.6 bits
- Proteomic and genomic analysis reveals novel Campylobacter jejuni outer membrane proteins and potential heterogeneity
Watson, EuPA open proteomics 2014 - “...Three lipoproteins, which are encoded by a locus of three genes, were also identified (CJJ81176_0124, CJJ81176_0125 and CJJ81176_0126). Oakland et al. [51] recently characterised homologues of these lipoproteins in strain NCTC11168 (Cj0089, Cj0090, and Cj0091). Few autotransporter proteins are annotated in C. jejuni yet they are...”
- “...high sequence similarity with proteins present within both strains of C. coli although the lipoprotein CJJ81176_0125, CJJ81176_1185 (Omp50), the hypothetical protein CJJ81176_0127 and the serine protease CJJ81176_1367 are absent. Several OM proteins of strain 81-176 were revealed to have high sequence similarity (up to 91%) with...”
P44084 Uncharacterized protein HI_0960 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
HI0960 H. influenzae predicted coding region HI0960 (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 34:116 / 116 (71.6%), covers 76.1% of PF07233, 31.5 bits
Or search for genetic data about PF07233 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory