Family Search for PF07237 (DUF1428)

PF07237 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YbaA / b0456 DUF1428 domain-containing protein YbaA from Escherichia coli K-12 substr. MG1655
TC 3.A.5.1.1 / P0AAQ6 Uncharacterized protein ybaA, component of General secretory pathway (Sec-SRP) complex from Escherichia coli (strain K12) (see 3 papers)
SF5M90T_427 DUF1428 domain-containing protein from Shigella flexneri 5a str. M90T
b0456 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
S0408 hypothetical protein from Shigella flexneri 2a str. 2457T
ECs0509 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 2:103 / 117 (87.2%), covers 100.0% of PF07237, 163.8 bits

• substrates: proteins
  tcdb comment: A biphasic pulling force may act on TMSs during translocon-mediated membrane integration (Ismail et al. 2012). Intermediate structures for the insertion of integral membrane proteins have been visualized (Bischoff et al. 2014). Insertion of the Type II single span (N-terminus, in, C-terminus, out) protein, RodZ, requires only SecYEG, SecA and the pmf, but not SecB, SecDF, YidC or FtsY (Rawat et al. 2015). The combined effects of ribosome and peptide binding to SecYEG may allow for co-translational membrane insertion of successive transmembrane segments (Ge et al. 2014). SecA penetrates deeply into the SecYEG channel during insertion, contacting transmembrane helices and periplasmic loops (Banerjee et al. 2017)
• RNA-seq analysis of the influence of anaerobiosis and FNR on Shigella flexneri
  Vergara-Irigaray, BMC genomics 2014
  • “...pore protein -2.98 SF5M90T_4307 putative inner membrane protein -3.40 SF1231 conserved hypothetical protein -3.71 -1.60 SF5M90T_427 ybaA conserved hypothetical protein -3.88 Phage related S1668 relF prophage maintenance protein 1.75 SF5M90T_1793 putative phage integrase protein 1.45 -1.60 SF5M90T_1056 hypothetical bacteriophage protein 1.14 SF5M90T_740 putative bacteriophage protein -1.93...”
• 5-azacytidine induces transcriptome changes in Escherichia coli via DNA methylation-dependent and DNA methylation-independent mechanisms
  Militello, BMC microbiology 2016
  • “...1.84 1.90E-04 b0506 allR Repressor for all (allantoin) and gcl (glyoxylate) operons; glyoxylate-inducible 1.93 1.10E-03 b0456 ybaA DUF1428 family protein 1.98 2.30E-03 Table 3 RT-qPCR analysis of gene expression changes in 5-azacytidine treated and dcm knockout Escherichia coli Gene Phase fc (log 2 )+aza/-aza (array) fc...”
• YcfR (BhsA) influences Escherichia coli biofilm formation through stress response and surface hydrophobicity
  Zhang, Journal of bacteriology 2007
  • “...ybiM ybaA yceK yjbJ yjdN ygaM ymgE b0806 b0456 b1050 b4045 b4107 b2672 b1195 Hypothetical protein Hypothetical protein Hypothetical protein Highly abundant...”
• Genetic analysis of the 5-azacytidine sensitivity of Escherichia coli K-12
  Bhagwat, Journal of bacteriology 1987
  • “...recA56 srlC relAl spoTI metBI W6 upp-11 rpsL254 S0408 srlC::TnlO recA56 S0408 udk-2 S0415 srlC::TnlO recA56 S0408 cdd-5 S0441 srlC::TnlO recA56 A(lac-cod-pro)...”
  • “...F- uvrA ArecA galK rpsL BH127 GM31 BH128 RP4182 BH112 W6 S0408 BH117 S0415 BH121 S0441 BH118 JM108 a Source F. Daldal F. Daldal CGSCa CGSC CGSC CGSC M. G....”
• Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
  Bergholz, BMC microbiology 2007
  • “...glnK -3.73 1 ECs1356 terE -2.90 1 ECs0507 ybaY 3.19 2 ECs1423 - 2.34 2 ECs0509 ybaA 2.56 2 ECs1438 yceP 4.78 2 ECs0518 aefA 2.12 2 ECs1466 yceD -2.86 1 ECs1467 rpmF -2.36 1 ECs2307 ydgG -2.69 1 ECs1500 potC -2.14 1 ECs2308 pntB -2.80...”

blr3898 blr3898 from Bradyrhizobium japonicum USDA 110
Aligns to 3:102 / 121 (82.6%), covers 99.0% of PF07237, 152.1 bits

• Transcriptomic Characterization of Bradyrhizobium diazoefficiens Bacteroids Reveals a Post-Symbiotic, Hemibiotrophic-Like Lifestyle of the Bacteria within Senescing Soybean Nodules
  Franck, International journal of molecular sciences 2018
  • “...bll3172, bll4771, bll6387, bll6597, bll8078, blr0490, blr0998, blr2666, blr2834, blr2882, blr2923, blr3110, blr3499, blr3603, blr3634, blr3898, blr4361, blr5112, blr7482, blr7579, bsr1885, bll0052, bll0242, bll0244, bll0493, bll1533, bll2075, bll2188, bll4292, bll6051, blr4337, blr7208, and blr7482. ijms-19-03918-t001_Table 1 Table 1 Categories of Expressed and Constitutive Genes. Each identified...”

NGR_c22640 RNA signal recognition particle 4.5S RNA from Rhizobium sp. NGR234
Aligns to 2:103 / 117 (87.2%), covers 100.0% of PF07237, 148.7 bits

• Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems
  Schmeisser, Applied and environmental microbiology 2009
  • “...Altogether, three ncRNA genes were linked to SRP: NGR_c22640 encoded 4.5S RNA, while NGR_b21180 and NGR_c05600 were also linked to the SRP (see Table...”

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