Family Search for PF07242 (DUF1430)
Running HMMer for PF07242
PF07242 hits 16 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
spr1802 Conserved hypothetical protein from Streptococcus pneumoniae R6
Aligns to 580:679 / 680 (14.7%), covers 100.0% of PF07242, 97.3 bits
SP_1988 immunity protein, putative from Streptococcus pneumoniae TIGR4
Aligns to 577:676 / 677 (14.8%), covers 100.0% of PF07242, 97.3 bits
- Co-Transcriptomes of Initial Interactions In Vitro between Streptococcus Pneumoniae and Human Pleural Mesothelial Cells
Heath, PloS one 2015 - “...sptigr4-1834 ptcC 0.00022 2.1 PTS system, IIC component sptigr4-1859 sp_1859 0.00267 5.7 transporter, putative sptigr4-1988 sp_1988 0.00304 2.3 immunity protein, putative sptigr4-2026 adhE 0.00407 28.4 alcohol dehydrogenase, sptigr4-2184 glpF 0.0135 2.5 glycerol uptake facilitator protein sptigr4-2187 sp_2187 0.0225 3.2 hypothetical protein Differential gene expression was analyzed...”
- “...in infection medium [ 18 ]. Other down-regulated genes included a putative immunity protein ( sp_1988 ) and several hypothetical proteins of unknown function ( Table 2 ). Changes in pneumococcal gene expression on interaction with Met-5A cells as identified by microarray analyses were validated by...”
DQM66_RS09500 bacteriocin-associated integral membrane family protein from Streptococcus pneumoniae
Aligns to 576:675 / 676 (14.8%), covers 100.0% of PF07242, 97.3 bits
SP_0686 hypothetical protein from Streptococcus pneumoniae TIGR4
Aligns to 573:672 / 673 (14.9%), covers 100.0% of PF07242, 96.3 bits
spr0601 Conserved hypothetical protein from Streptococcus pneumoniae R6
Aligns to 573:672 / 673 (14.9%), covers 100.0% of PF07242, 96.3 bits
- StaR Is a Positive Regulator of Topoisomerase I Activity Involved in Supercoiling Maintenance in Streptococcus pneumoniae
de, International journal of molecular sciences 2023 - “...spr0504 2.2 Pathogenesis LPxTG protein spr0561 ( prtA) 2.3 Hypothetical proteins spr0600 2.0 Hypothetical proteins spr0601 2.1 Hypothetical proteins spr0929 ( staR ) 438.1 Transport: antibiotics ABCT ATP-binding/membrane spr1289 2.2 Hypothetical proteins spr1402 2.3 Transport: cations ABCT ATP-binding-Mn spr1492 ( psaB) 4.1 Transport: cations ABCT membrane...”
- A Pneumococcal Protein Array as a Platform to Discover Serodiagnostic Antigens Against Infection
Olaya-Abril, Molecular & cellular proteomics : MCP 2015 - “...spr1216 (90), spr1887 (100) SPJ_1852 (96), SPP_0072 (94), spr0601 (98), spr1221 (99), spr1496 (92) a Protein categories were established according to LocateP...”
- Tn5253 family integrative and conjugative elements carrying mef(I) and catQ determinants in Streptococcus pneumoniae and Streptococcus pyogenes
Mingoia, Antimicrobial agents and chemotherapy 2014 - “...98% identities, respectively, to the adjacent genes spr0602 and spr0601 of the S. pneumoniae R6 genome and SP0687 and SP0686 of the S. pneumoniae TIGR4 genome....”
- Genetic elements responsible for erythromycin resistance in streptococci
Varaldo, Antimicrobial agents and chemotherapy 2009 - Composite structure of Streptococcus pneumoniae containing the erythromycin efflux resistance gene mefI and the chloramphenicol resistance gene catQ
Mingoia, Antimicrobial agents and chemotherapy 2007 - “...an ORF displaying 98.1% homology with the same ORF designated spr0601 in R6 and SP0686 in TIGR4 (Fig. 1). The sequence of tnp1 has been submitted to the...”
- “...of the 5216IQ complex was just upstream of the spr0601 gene of the S. pneumoniae R6 chromosome (designated SP0686 in TIGR4). The left junction was just...”
spr1772 Hypothetical protein, truncation from Streptococcus pneumoniae R6
SPD_1754 hypothetical protein from Streptococcus pneumoniae D39
Aligns to 155:254 / 255 (39.2%), covers 100.0% of PF07242, 96.0 bits
- Highly Resistant Serotype 19A Streptococcus pneumoniae of the GPSC1/CC320 Clone from Invasive Infections in Poland Prior to Antipneumococcal Vaccination of Children
Puzia, Infectious diseases and therapy 2023 - “...the Tn 2010 -type element [ 34 ], inserted between counterparts of the spr1764 and spr1772 genes in the R6 genome. In the case of 73 isolates, the transposon sequence was identical to the original Tn 2010 (Li 2011) with the exception of a silent SNP...”
- Production of a class II two-component lantibiotic of Streptococcus pneumoniae using the class I nisin synthetic machinery and leader sequence
Majchrzykiewicz, Antimicrobial agents and chemotherapy 2010 - “...peptidase. The last two genes of the regulon, spr1772 and spr1773, encode a putative immunity protein and a putative ABC transporter, respectively. This...”
- Global transcriptional analysis of clpP mutations of type 2 Streptococcus pneumoniae and their effects on physiology and virulence
Robertson, Journal of bacteriology 2002 - “...spr1549 spr1629 spr1630 spr1762 spr1765 spr1767 spr1768 spr1772 Unknown Unknown Probable integral membrane protein Unknown Unknown Unknown Unknown Unknown...”
- Genome of the bacterium Streptococcus pneumoniae strain R6
Hoskins, Journal of bacteriology 2001 - “...spr1380 spr1381 spr1520 spr1521 spr1683 spr1734 spr1736 spr1772 spr1871 spr1872 spr1900 spr1955 spr1956 spr1984 spr1985 spr1989 spr1990 spr1999 spr2000 spr2036...”
- Pneumococcal galactose catabolism is controlled by multiple regulators acting on pyruvate formate lyase
Al-Bayati, Scientific reports 2017 - “...Hypothetical protein 11.5 SPD_1751 Hypothetical protein 8.1 SPD_1752 Toxin secretion ABC transporter, ATP-binding/permease protein 10.2 SPD_1754 Hypothetical protein 5.5 SPD_1755 Hypothetical protein 5.4 SPD_1756 ABC transporter, ATP-binding protein 3.8 SPD_1756 Hypothetical protein 2.5 SPD_1830 Glycosyl hydrolase, family 1 2 SPD_1831 PTS system, IIC component 2.8 SPD_1832...”
lmo2775 hypothetical membrane protein from Listeria monocytogenes EGD-e
Aligns to 619:718 / 722 (13.9%), covers 100.0% of PF07242, 85.8 bits
- Bacteriocins of Listeria monocytogenes and Their Potential as a Virulence Factor
Lee, Toxins 2020 - “...fact, the operon to which lmo2776 belongs to includes only two other genes, lmo2774 and lmo2775 , whose products are putatively involved in immunity and transport functions, respectively [ 53 ] ( Figure 3 ). Also, this bacteriocin was expressed in the laboratory condition (pronouncedly, in...”
- A Listeria monocytogenes Bacteriocin Can Target the Commensal Prevotella copri and Modulate Intestinal Infection
Rolhion, Cell host & microbe 2019 - “...( FigureS1 B). This gene belongs to a locus containing two other genes, lmo2774 and lmo2775, encoding potential immunity and transport systems ( Glaser etal., 2001 ). It is present in lineage I strains responsible for the majority of Lm clinical cases ( Maury etal., 2016...”
- “...amino acid sequence similarity with members of the Lcn972 family. Because expression of lmo2774 , lmo2775 , and lmo2776 is significantly higher in stationary phase compared to exponential phase of EGD-e at 37C in BHI ( FigureS1 D), all experiments described below were conducted with Lm...”
- Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated at two different fish processing plants sampled 6 years apart
Holch, Applied and environmental microbiology 2013 - “...related to bacteriocin production and transport (lmo2774, lmo2775, and the 3=-terminal part of lmo2776). Further studies of highly persistent strains are...”
- “...position 2857618) and F2365. The area covers lmo2774, lmo2775, and the 3=-terminal part of lmo2776. lmo2774 encodes a homologue of a putative bacteriocin export...”
TC 9.A.7.1.1 / Q9L651 Class IIc bacteriocin, Lactococcin 972 immunity protein from Lactococcus lactis (subsp. lactis) (Streptococcus lactis) (see 2 papers)
Aligns to 549:647 / 648 (15.3%), covers 99.0% of PF07242, 78.6 bits
- substrates: small molecules
SSU05_0247 hypothetical protein from Streptococcus suis 05ZYH33
Aligns to 493:592 / 593 (16.9%), covers 100.0% of PF07242, 76.1 bits
SSU0228 membrane protein from Streptococcus suis P1/7
Aligns to 561:660 / 661 (15.1%), covers 100.0% of PF07242, 75.9 bits
SAR0695 putative membrane protein from Staphylococcus aureus subsp. aureus MRSA252
Aligns to 545:643 / 644 (15.4%), covers 100.0% of PF07242, 70.3 bits
SA0886 hypothetical protein from Staphylococcus aureus subsp. aureus N315
Aligns to 555:653 / 654 (15.1%), covers 100.0% of PF07242, 48.5 bits
BJL64_05095 bacteriocin-associated integral membrane family protein from Staphylococcus aureus
Aligns to 555:653 / 654 (15.1%), covers 100.0% of PF07242, 48.4 bits
SACOL1038 membrane protein from Staphylococcus aureus subsp. aureus COL
SAOUHSC_00968 hypothetical protein from Staphylococcus aureus subsp. aureus NCTC 8325
SAUSA300_0934 membrane protein from Staphylococcus aureus subsp. aureus USA300_FPR3757
NWMN_0901 hypothetical protein from Staphylococcus aureus subsp. aureus str. Newman
Aligns to 555:653 / 654 (15.1%), covers 100.0% of PF07242, 47.1 bits
SAR1002 putative membrane protein from Staphylococcus aureus subsp. aureus MRSA252
Aligns to 555:653 / 654 (15.1%), covers 100.0% of PF07242, 46.5 bits
- A functional menadione biosynthesis pathway is required for capsule production by Staphylococcus aureus
Altwiley, Microbiology (Reading, England) 2021 - “...arsR2 arsenical resistance operon repressor 2 0.024274209 SAR0108 putative peptidase 0.024560717 SAR0559 putative aminotransferase 0.02466874 SAR1002 putative membrane protein 0.02622901 SAR0942 putative membrane protein 0.026651981 SAR2740 conserved hypothetical protein 0.026988447 ureC urease alpha subunit 0.027434322 qoxB putative quinol oxidase polypeptide I 0.028188487 mnhD Na+/H+antiporter subunit 0.030064463...”
SE1039_RS11385 DUF1430 domain-containing protein from Staphylococcus equorum
Aligns to 542:647 / 650 (16.3%), covers 93.0% of PF07242, 40.4 bits
Or search for genetic data about PF07242 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory