Family Search for PF07256 (DUF1435)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF07256 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
YjjZ / b4567 DUF1435 domain-containing protein YjjZ from Escherichia coli K-12 substr. MG1655 (see 3 papers)
P55914 Uncharacterized protein YjjZ from Escherichia coli (strain K12)
b4567 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:75 / 78 (96.2%), covers 100.0% of PF07256, 126.4 bits
DR76_RS12845, E2348C_4667 DUF1435 domain-containing protein from Escherichia coli O127:H6 str. E2348/69
Aligns to 1:75 / 78 (96.2%), covers 100.0% of PF07256, 125.5 bits
SF5M90T_4307 DUF1435 domain-containing protein from Shigella flexneri 5a str. M90T
Aligns to 1:75 / 78 (96.2%), covers 100.0% of PF07256, 125.3 bits
- RNA-seq analysis of the influence of anaerobiosis and FNR on Shigella flexneri
Vergara-Irigaray, BMC genomics 2014 - “...protein remnant -2.64 SF5M90T_2146 yohO membrane protein -2.96 SF5M90T_1952 putative outer membrane pore protein -2.98 SF5M90T_4307 putative inner membrane protein -3.40 SF1231 conserved hypothetical protein -3.71 -1.60 SF5M90T_427 ybaA conserved hypothetical protein -3.88 Phage related S1668 relF prophage maintenance protein 1.75 SF5M90T_1793 putative phage integrase protein...”
STM4552 putative inner membrane protein from Salmonella typhimurium LT2
SL1344_4483, STM14_5469 DUF1435 domain-containing protein from Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Aligns to 1:75 / 78 (96.2%), covers 100.0% of PF07256, 124.6 bits
- Stress response, amino acid biosynthesis and pathogenesis genes expressed in Salmonella enterica colonizing tomato shoot and root surfaces
Han, Heliyon 2020 - “...protein 2.2 0.002 2.0 0.003 STM4271 STM4271 murein hydrolase regulator LrgA 1.4 0.006 2.2 0.003 STM4552 STM4552 putative inner membrane protein 2.3 0.002 STM1528 STM1528 putative outer membrane protein; calcium/calmodulin dependent protein kinase ii association 1.9 0.003 STM3030 STM3030 YfdX protein 5.7 0.008 STM04875 STM04875 hypothetical...”
- Evolution of Variable Number Tandem Repeats and Its Relationship with Genomic Diversity in Salmonella Typhimurium
Fu, Frontiers in microbiology 2016 - “...L2187 hemX STM3936 Uroporphyrinogen III C-methyltransferase M I L2185 pfkA STM4062 6-phosphofructokinase S R L2168 STM4552 Inner membrane protein P L A phylogenetic tree was inferred from the SNPs (Figure 3B ). Some isolates were indistinguishable by SNP-based typing but were differentiated by MLVA, and vice...”
- Cassette-like variation of restriction enzyme genes in Escherichia coli C and relatives
Sibley, Nucleic acids research 2004 - “...are found adjacent to the border (Z5943, yjiT, STM4552 and penicillin acylase), but deletion and homologous recombination have obscured relationships, and two...”
- Investigating howSalmonellacolonise alfalfa using a whole genome screen
Holden, 2023 - Intracellular niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica
Powers, PLoS pathogens 2021 - “...sitABCD operon), SL1802 , SL3990 ( SL3990 - SL3989 operon), sufA ( sufABCDSE operon), yjjZ (SL1344_4483), STnc3080 and STnc3250 (Figs 3 and S3 ). Up-regulation of STnc4000, ilvC and SL1344_2715 was not observed by fluorescence microscopy ( S4 Fig ). Quantification using ImageJ software of the...”
- “...of S . Typhimurium in the cytosol. While the function of YjjZ remains unknown, yjjZ (SL1344_4483) is part of the Fur regulon in S . Typhimurium [ 112 ] and UPEC [ 113 ]; Fur is the master regulator of iron homeostasis in bacteria [ 114...”
- Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation
Lago, Scientific reports 2017 - “...7, 1114 Bacteria, Archaea and Eukaryota STM14_5292 DUF1107 IPR009491 68 ytfK 7, 1214 - Proteobacteria STM14_5469 65% identity with E . coli YjjZ, 3TM fragments, DUF1435 IPR009885 78 yjjZ 13, 14 Enterobacteriaceae STM14_5479 Not translated under the conditions used 44 Salmonella STM14_5481 Start codon re-annotated, 98%...”
- “...the uncharacterized small ORFs, for which no protein was identified by LC-MS (STM14_2173, STM14_2189, STM14_5292, STM14_5469, STM14_5479, STM14_5481), was assessed by immunodetection of the corresponding 3xFlag-tagged proteins. Proteins were detected for all of them, except STM14_5469 and STM14_5479 (Fig. 1b ). In the case of STM14_5469,...”
SEN4317 hypothetical protein from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 1:75 / 78 (96.2%), covers 100.0% of PF07256, 124.0 bits
c5447 Hypothetical protein from Escherichia coli CFT073
Aligns to 38:112 / 115 (65.2%), covers 100.0% of PF07256, 124.0 bits
- Influence of Glucose Availability and CRP Acetylation on the Genome-Wide Transcriptional Response of Escherichia coli: Assessment by an Optimized Factorial Microarray Analysis
Guebel, Frontiers in microbiology 2018 - “...genes are the following: c2666, yjfN , c1304, prpB , c1608, ycfQ, bsmA / yjfO, c5447, mocA / ygfJ, ydcS . There, the gene ydcS codifies a protein with activity of polyhydroxybutyrate (PHB) synthase, the bsmA / ycfO gene is related to peroxide resistance, biofilm stress,...”
STY4905 conserved hypothetical protein from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 1:75 / 78 (96.2%), covers 100.0% of PF07256, 121.1 bits
- Transcriptomic study of Salmonella enterica subspecies enterica serovar Typhi biofilm
Chin, BMC genomics 2017 - “...subunit protein S18 3.25938 2.00E-04 0.00568281 rpsS 50S ribosomal subunit protein L22 2.93416 5.00E-05 0.00183687 STY4905 Hypothetical protein 2.8976 5.00E-05 0.00183687 rplU 50S ribosomal subunit protein L21 2.76352 5.00E-05 0.00183687 rpmA 50S ribosomal subunit protein L27 2.74781 5.00E-05 0.00183687 rpsJ 50S ribosomal subunit protein L3 2.65265...”
- “...genes. The down-regulated genes include 9 hypothetical proteins. NCBI BLAST analysis showed that the gene STY4905 was similar to gene DUF1435 , a putative membrane protein in Salmonella enterica subsp. enterica serovar Senftenberg. Gene STY1229 was found to code for a protein which was closely related...”
YPO0426 putative membrane protein from Yersinia pestis CO92
Aligns to 1:75 / 79 (94.9%), covers 100.0% of PF07256, 117.5 bits
- New insights into how Yersinia pestis adapts to its mammalian host during bubonic plague
Pradel, PLoS pathogens 2014 - “...the homoserine O-succinyltransferase gene metA , the ribonucleoside reductase operon nrdHIEF or the uncharacterized gene ypo0426 required significantly more time to cause fatal plague (median survival 5 days vs 4 days for the mutants and the wild-type strain respectively). The ypo0988 , ptsG and znuABC ypo2062...”
- “...complement), and the ibpA , ypo3369 , ypo0988 , amn , ypo0617-0618 , ypo2586-2587 and ypo0426 mutants had significant a growth defect (either because they confer a metabolic advantage or effective complement tolerance). 10.1371/journal.ppat.1004029.g006 Figure 6 Stress, metabolic and uncharacterized genes are needed for resistance and/or...”
KPNJ2_04728 DUF1435 domain-containing protein from Klebsiella pneumoniae 30684/NJST258_2
Aligns to 1:75 / 79 (94.9%), covers 97.3% of PF07256, 109.7 bits
Or search for genetic data about PF07256 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory