Family Search for PF07290 (YqiJ_OB)

PF07290 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SO1376 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 144:207 / 211 (30.3%), covers 96.9% of PF07290, 70.2 bits

• Knock-out of SO1377 gene, which encodes the member of a conserved hypothetical bacterial protein family COG2268, results in alteration of iron metabolism, increased spontaneous mutation and hydrogen peroxide sensitivity in Shewanella oneidensis MR-1
  Gao, BMC genomics 2006
  • “...in vivo functions. According to the sequence annotation [ 6 ], genes encoding SO1377 and SO1376 might be in the same operon. The SO1377 and SO1376 genes are only separated by 23-bp. On the downstream of the SO1377-encoding gene, a -independent transcriptional terminator is identified. Thus,...”
  • “...transcriptional unit. The genes encoding SO1376 and 1377 are flanked by SO1378 and SO1375 loci. SO1376 is annotated as a putative oxidoreductase of 212 amino acids. A PHI/PSI-BLAST search showed that SO1376 belongs to DUF1449, a protein family consisting of several bacterial proteins of around 210...”

M3Q_2382 OB-fold-containig protein from Acinetobacter baumannii TYTH-1
Aligns to 129:189 / 202 (30.2%), covers 96.9% of PF07290, 62.4 bits

• Quantitative assessment of insertion sequence impact on bacterial genome architecture
  Adams, Microbial genomics 2016
  • “...different IS elements. Twelve different IS elements were found in the 176 bp region between M3Q_2382 and M3Q_2383 in 389 strains. The repeated insertions at this locus suggest that these genes may encode important functions, although each encodes a hypothetical protein with no functionally characterized domains....”

YqiJ / b3050 DUF1449 domain-containing inner membrane protein YqiJ from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b3050 predicted inner membrane protein from Escherichia coli str. K-12 substr. MG1655
P76657 Inner membrane protein YqiJ from Escherichia coli (strain K12)
Aligns to 138:200 / 209 (30.1%), covers 95.3% of PF07290, 55.2 bits

• Global gene expression profiling of asymptomatic bacteriuria Escherichia coli during biofilm growth in human urine
  Hancock, Infection and immunity 2007
  • “...33.6 31.5 4,659 2,532 5,787 4,859 yqiJ oxyS c2422 ddg b3050 b4458 c2422 b2378 30.6 30.5 28.1 26.2 1,522 3,916 1,096 1,859 ygiD c3685 aaeX grxA b3039 c3685 b3242...”
• Role of the rapA gene in controlling antibiotic resistance of Escherichia coli biofilms
  Lynch, Antimicrobial agents and chemotherapy 2007
  • “...and U1 Gene name Annotation Fold change b0585 b3242 b1705 b3050 b0310 b1916 b3071 c0394 c0397 b3241 c1250 c1624 b2181 b0803 b2016 fes yhcR ydiE yqiJ ykgH sdiA...”
• Characterization of a novel type IV pilus locus encoded on the large plasmid of locus of enterocyte effacement-negative Shiga-toxigenic Escherichia coli strains that are virulent for humans
  Srimanote, Infection and immunity 2002
  • “...protein(s); source (accession no.) YqiJ; E. coli K-12 (P76657) YqiK; E. coli K-12 (P77306) PilI; plasmid R64 (AB027308) PilI; plasmid ColIb-P9 (AB021078) PilL;...”

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