Family Search for PF07295 (DUF1451)

PF07295.11 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

y1185 putative alpha helical protein (NCBI ptt file) from Yersinia pestis KIM
Aligns to 19:163 / 166 (87.3%), covers 99.3% of PF07295, 184.1 bits

• Simultaneous protein expression and modification: an efficient approach for production of unphosphorylated and biotinylated receptor tyrosine kinases by triple infection in the baculovirus expression system
  Erdmann, Journal of biomolecular techniques : JBT 2010 (secret)

YbeL / b0643 DUF1451 domain-containing protein YbeL from Escherichia coli K-12 substr. MG1655 (see 4 papers)
b0643 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
NP_415176 DUF1451 domain-containing protein YbeL from Escherichia coli str. K-12 substr. MG1655
ECs0681 putative alpha helical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 13:157 / 160 (90.6%), covers 99.3% of PF07295, 179.9 bits

• Genome-Scale Mapping of Escherichia coli σ54 Reveals Widespread, Conserved Intragenic Binding
  Bonocora, PLoS genetics 2015
  • “...2197 10.286 IA07 674001 1 GC GG TATTGCTC TTGC A 673997 + b0642 leuS - b0643 ybeL 225 8.124 IA08 702665 8 C TGGC CTGCTTTA TGC A 702663 + b0678 nagB - b0679 nagE 485 10.647 IA09 797417 4 CCA GC ACGGTTT TTGC A 797422 +...”
• Global analysis of extracytoplasmic stress signaling in Escherichia coli
  Bury-Moné, PLoS genetics 2009
  • “...yhjV b3539 Inner membrane transport protein YhjV 2.7 ybaQ b0483 Predicted transcriptional regulator 2.6 ybeL b0643 Conserved protein 2.6 smpA O W b2617 Outer membrane lipoprotein, component of Outer Membrane Protein Assembly Complex 2.5 puuC (aldH) puuB (ordL), puuE (goaG) b1300-2 -glutamyl--aminobutyraldehyde dehydrogenase (putrescine utilization pathway)...”
• Analysis of promoter targets for Escherichia coli transcription elongation factor GreA in vivo and in vitro
  Stepanova, Journal of bacteriology 2007
  • “...conditions Alias Effect of wt GreA (fold) ybeLb b0643 3.2 Conserved protein; putative alpha helical protein gatD gatC gatB gatA gatZ gatY b2091 b2092...”
• Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
  Weber, Journal of bacteriology 2005
  • “...b2659 b2266 b1990 b3361 b1051 b4107 b0389 b0419 b0581 b0643 b0707 b0753 b0767 b0865 b1003 b1050 b1188 b1164 b1258 b1259 b1341 b1547 b1614 b1783 b1784 b1847...”
• Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
  Smulski, Journal of bacteriology 2001
  • “...b0305 b0358 b0458 b0485 b0572 b0573 b0581 b0600 b0607 b0643 b0662 b0707 b0753 b0786 b0789 b0790 b0800 b0806 b0836 b0865 b0897 b0964 b0966 b1003 b1045 b1050...”
• Sea Bass Immunization to Downsize the Betanodavirus Protein Displayed in the Surface of Inactivated Repair-Less Bacteria
  Lama, Vaccines 2019
  • “...24 ] YAIN + frgC 91220 NP_414891 26.3 [ 39 ] YBEL + frgC 91220 NP_415176 34.8 [ 39 ] vaccines-07-00094-t002_Table 2 Table 2 Comparison of E. coli culture media. Component Concentration, % TB SB Yeast extract 2.4 X X Glycerol 0.8 X X KHPO4 0.9...”
• Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
  Bergholz, BMC microbiology 2007
  • “...ybdE -2.70 1 ECs2362 lhr -2.16 1 ECs0670 dacA -2.32 1 ECs2367 purR -2.51 1 ECs0681 ybeL 2.78 2 ECs2431 yniA 3.52 2 ECs0773 tolR -2.29 1 ECs2433 yniC 2.44 3 ECs0782 aroG -3.09 1 ECs2445 osmE 2.33 2 ECs0800 ybhC -2.13 1 ECs2510 yeaV 2.06...”

STM0653 putative cytoplasmic protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 13:154 / 157 (90.4%), covers 99.3% of PF07295, 179.8 bits

• Global transcriptional analysis of dehydrated Salmonella enterica serovar Typhimurium
  Gruzdev, Applied and environmental microbiology 2012
  • “...phoH (STM1126) minE (STM1816) yahO (STM0366) ybeL (STM0653) tke1 (STM_sRNA) STM1731 Putative acetyl coenzyme A synthetase 2-Methylcitrate dehydratase Putative...”

VC0957 conserved hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 13:153 / 156 (90.4%), covers 99.3% of PF07295, 167.2 bits

• Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing
  Liu, Nucleic acids research 2009
  • “...VC1499 16111611611276 (+) 116 + + + ORF6 VC0689 736177736300 (+) 124 + + ORF7 VC0957 10215231021633 (+) 111 + + a For IGR-sRNA candidates, the gene numbers for the up- and downstream ORF are indicated. Genes encoded on the plus strand are denoted with >>...”
  • “...ORF7) are transcribed within ORFs that are less that 500 bp long (VC2540, 393 bp; VC0957, 471 bp, respectively). These ORFs are annotated as encoding hypothetical proteins; however, in our northern blots we do not observe the full-length mRNA transcripts ( Supplementary Figure 2 ). It...”

SO_1175 conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1
Aligns to 3:145 / 148 (96.6%), covers 98.6% of PF07295, 166.5 bits

• Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation
  Gupta, Genome research 2007
  • “...used to identify an earlier gene start position for SO_1175. Five frequently observed peptides (Fig. 4A) align upstream to and within the same reading frame as...”
  • “...Dalgarno 1974). As added proof, the alignment of SO_1175 with similar proteins deduced from other Shewanella genome sequences (Fig. 4C) is consistent with the...”

BAU10_02660 zinc ribbon-containing protein from Vibrio alginolyticus
Aligns to 13:153 / 156 (90.4%), covers 98.6% of PF07295, 162.4 bits

• Identification of a Novel Small RNA srvg23535 in Vibrio alginolyticus ZJ-T and Its Characterization With Phenotype MicroArray Technology
  Deng, Frontiers in microbiology 2018
  • “...BAU10_03760 Hypothetical protein BAU10_19400 Hypothetical protein BAU10_18585 Hypothetical protein BAU10_07805 Hypothetical protein BAU10_19060 Hypothetical protein BAU10_02660 Hypothetical protein Construction of srvg23535 Null Mutant A gene disruptant of srvg23535 , from 46 bp before the 5 end to 2 bp after the 3 end, was constructed (...”

HMPREF0389_RS04690 rubredoxin-like protein from Filifactor alocis ATCC 35896
Aligns to 1:45 / 46 (97.8%), covers 27.2% of PF07295, 33.6 bits

• Role of Superoxide Reductase FA796 in Oxidative Stress Resistance in Filifactor alocis
  Mishra, Scientific reports 2020
  • “...both 1Fe- and 2Fe-SORs 41 . F. alocis carries genes that encode proteins HMPREF0389_00337 and HMPREF0389_RS04690 annotated as rubredoxin and rubredoxin like protein respectively. Though we did not find any NADH: rubredoxin oxidoreductase (NROR) in the genome, it does have a gene HMPREF0389_00379 which encodes NAD(P)/FAD-dependent...”

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