Family Search for PF07305 (DUF1454)

PF07305 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YiiQ / b3920 DUF1454 domain-containing protein YiiQ from Escherichia coli K-12 substr. MG1655
b3920 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 8:192 / 199 (93.0%), covers 99.5% of PF07305, 307.6 bits

• Combinatorial strategies for improving multiple-stress resistance in industrially relevant Escherichia coli strains
  Lennen, Applied and environmental microbiology 2014
  • “...b3787 b0676 b3786 b2188 b3912 b3794 b1857 b4484 b0065 b2784 b3920 b4233 rfe wzzE rffD nagC rffE yejM cpxR ECW_m4081 rffM znuA cpxP yabI relA yiiQ mpl 15.30...”
• The association of DNA damage response and nucleotide level modulation with the antibacterial mechanism of the anti-folate drug trimethoprim
  Sangurdekar, BMC genomics 2011
  • “...unknown uhpT b3666 Fosfomycin sensitivity; sugar P transport system; transport protein for hexose P's yiiQ b3920 Function unknown uvrA b4058 Excision nuclease subunit A; repair of UV damage to DNA; LexA regulon; binds Zn(II) fimE b4313 Site-specific recombinase for fimA promoter segment inversion; bias for ON...”

SC3971 putative periplasmic protein from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 9:193 / 199 (93.0%), covers 99.5% of PF07305, 293.3 bits

• A new class of Caulobacter crescentus flagellar genes
  Leclerc, Journal of bacteriology 1998
  • “...SC1132 SC1134 SC1135 SC2663 SC3090 SC3809 SC3898 SC3899 SC3971 SC3973 SC3975 SC4016 SC4250 Wild type syn-1000 bla-6 syn-1000 ctrA401 recA526 zzz::Tn5 str-30...”
  • “...analysis (data not shown), resulting in strains SC3971, SC3973, SC3975, and SC4016, containing the chromosomal fusions flmA::cat, flmC::cat, flmE::cat, and...”

STM14_4907 YiiQ family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
STM4082 putative periplasmic protein from Salmonella typhimurium LT2
Aligns to 8:192 / 198 (93.4%), covers 99.5% of PF07305, 293.0 bits

• Global Screening of Salmonella enterica Serovar Typhimurium Genes for Desiccation Survival
  Mandal, Frontiers in microbiology 2017
  • “...protein STM14_3164 S 2 [0.63] {34} STM14_3329 putative inner membrane protein S 1 [2.64] {8} STM14_4907 ( yiiQ ) hypothetical protein STM14_4907 S 1 [0.77] {3} STM14_5242 ( hfq ) s RNA-binding protein Hfq T 1 [0.57] {6} STM14_0870 ( tolB ) s , o translocation...”
  • “...hypothetical proteins were STM14_0872 ( ybgF ), STM14_1487, STM14_2015, STM14_3164 ( gogB ), STM14_3165, and STM14_4907 ( yiiQ ). YbgF ( ybgC - tolQRAB - pal - ybgF operon) is involved in maintenance of cell envelope integrity. GogB, a phage-encoded effector protein, is an anti-inflammatory effector,...”
• Discovery of novel secreted virulence factors from Salmonella enterica serovar Typhimurium by proteomic analysis of culture supernatants
  Niemann, Infection and immunity 2011
  • “...(PdgL), STM1809, STM2139, STM2585, STM3762 (CigR), and STM4082 (YiiQ). Confirmation of novel secreted proteins. To determine if candidate effectors were...”
• Computational prediction of type III and IV secreted effectors in gram-negative bacteria
  McDermott, Infection and immunity 2011
  • “...STM1087 STM1599 STM1809 STM1513 STM1633 STM0211 STM1121 STM3392 STM4082 STM3595 STM1548 a SIEVE EffectiveT3 Lower and Schneider 41 CyaA fusion assay 2 3 5...”
• Formation of Escherichia coli Hfr strains by integrative suppression with the P group plasmid RP1
  Martin, Journal of bacteriology 1981
  • “...plamid, or phage P. aeruginosa PAM2999 S. tphimwrium STM4082 LT2 (RP1) E. coli EcK3731 Genotype or phenotype Reference sourceand/or rpsL (RP1) thy (RP1) R....”
  • “...High-titer lysates of PRD1 grown on Salmonella typhimurium strain STM4082 were prepared by a combination of the methods of Olsen et al. (28) and Miller (23)....”

NT01EI_3786 hypothetical protein from Edwardsiella ictaluri 93-146
Aligns to 5:205 / 209 (96.2%), covers 97.4% of PF07305, 222.8 bits

• Transposon mutagenesis and identification of mutated genes in growth-delayed Edwardsiella ictaluri
  Kalindamar, BMC microbiology 2019
  • “...13 Eis158 NT01EI_0022 Sulfurtransferase, TusA 8.00E-46 10 Eis171 NT01EI_3723 Magnesium-translocating P-type ATPase 0 71 Eis172 NT01EI_3786 Hypothetical protein 1.00E-26 24 Eis173 NT01EI_3265 Acyltransferase/AMP-dependent synthetase and ligase family 0 2 54 Eis174 NT01EI_3721 Hypothetical protein 3.00E-25 7 Eis175 NT01EI_3774 IS1 transposase 7.00E-93 19 Eis176 NT01EI_0962 esaT 5.00E-129...”

Or search for genetic data about PF07305 in the Fitness Browser