Family Search for PF07308 (DUF1456)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF07308 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YPK_2874 hypothetical protein from Yersinia pseudotuberculosis YPIII
YPO1186 conserved hypothetical protein from Yersinia pestis CO92
2 alignments in 3:153 / 157 (86.6%), covering up to 100.0% of PF07308, 190.9 bits

• Genome-Scale Mapping Reveals Complex Regulatory Activities of RpoN in Yersinia pseudotuberculosis
  Mahmud, mSystems 2020
  • “...TTGGCGTGAATTTTGCGC 10.68 32,28 YPK_2636 17, 14 IGAs2 3172389 16.6 14.6 11.7 AGGGCATAAACGGTGCAA + 8.71 NA YPK_2874 NA IGAs3 4432739 9.6 11.8 8.2 CTGGCACGCTAAGTGCAA 10.25 NA YPK_4019 NA a Abbreviations: IGS, intergenic sense; IGAs, intergenic antisense; PC, peak center base pair; PSL, peak strength logarithmic phase; PSI,...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...(0.004) YPTB1215 YPO1174 hypothetical protein 1.527 (0.047) YPTB1222 YPO1181 putative membrane protein 0.697 (0.032) YPTB1227 YPO1186 conserved hypothetical protein 0.634 (0.005) YPTB1297 YPO1261 conserved hypothetical protein 0.659 (0.014) YPTB1387 YPO1361 putative membrane protein 1.593 (0.003) YPTB1389 YPO1363 putative virulence factoR 0.632 (0.043) YPTB1422 YPO1397 conserved hypothetical...”
• Application of high-density array-based signature-tagged mutagenesis to discover novel Yersinia virulence-associated genes
  Karlyshev, Infection and immunity 2001
  • “...YPO3004 YPO3099 YPO2532 YPO2712 YPO2440 YPO2287a YPO1108 YPO1174 YPO1186 YPO1382 (promoter region) YPO1987 YPO1994 YPO2174 YPO0054 YPO0337 YPO0702 59 (98) NS NS...”

YPTB1227 hypothetical protein from Yersinia pseudotuberculosis IP 32953
2 alignments in 3:153 / 157 (86.6%), covering up to 100.0% of PF07308, 189.6 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...0.596 (0.004) YPTB1215 YPO1174 hypothetical protein 1.527 (0.047) YPTB1222 YPO1181 putative membrane protein 0.697 (0.032) YPTB1227 YPO1186 conserved hypothetical protein 0.634 (0.005) YPTB1297 YPO1261 conserved hypothetical protein 0.659 (0.014) YPTB1387 YPO1361 putative membrane protein 1.593 (0.003) YPTB1389 YPO1363 putative virulence factoR 0.632 (0.043) YPTB1422 YPO1397 conserved...”

XAC0294 conserved hypothetical protein from Xanthomonas axonopodis pv. citri str. 306
2 alignments in 3:155 / 157 (87.9%), covering up to 100.0% of PF07308, 182.5 bits

• The ATP-dependent RNA helicase HrpB plays an important role in motility and biofilm formation in Xanthomonas citri subsp. citri
  Granato, BMC microbiology 2016
  • “...is located within the genome at position 348799351300 (Fig. 1 ). The adjacent genes upstream (XAC0294) and downstream (XAC0292) of this location are in the same orientation and encode hypothetical proteins. XAC0293 was annotated as an 833 amino acid-long ATP-dependent RNA helicase, and the predicted pI...”

PP1190 conserved hypothetical protein from Pseudomonas putida KT2440
2 alignments in 3:153 / 153 (88.9%), covering up to 100.0% of PF07308, 180.2 bits

• UEG Week 2023 Poster Presentations
  , United European gastroenterology journal 2023

YehS / b2124 DUF1456 domain-containing protein YehS from Escherichia coli K-12 substr. MG1655 (see 3 papers)
P33355 Uncharacterized protein YehS from Escherichia coli (strain K12)
b2124 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
2 alignments in 3:152 / 156 (86.5%), covering up to 98.5% of PF07308, 171.8 bits

• A coordinated proteomic approach for identifying proteins that interact with the E. coli ribosomal protein S12
  Strader, Journal of proteome research 2013
  • “...21 237 44.3 13 103 24.5 P76116 uncharacterized yncE 10 44 38.8 4 11 18.4 P33355 uncharacterized yehS 7 22 50 ** P0AF93 uncharacterized yjgf 7 52 77.4 8 32 69.5 P0CE47 Elongation factor Tu 34 1370 84.5 ** P0A6P1 Elongation factor Ts 16 52 55.8...”
• A proteomic and transcriptomic approach reveals new insight into beta-methylthiolation of Escherichia coli ribosomal protein S12
  Strader, Molecular & cellular proteomics : MCP 2011
  • “...by SPA-S12 pull-downs Accession P0AEI4 P75838 P76116 P33355 P0AF93 P0CE47 P0A6P1 P0A6M8 P0A6N4 P0A6N8 P0A6X3 P21499 P0A805 P0A8A8 a Interacting proteins...”
• Identification of a target gene and activating stimulus for the YpdA/YpdB histidine kinase/response regulator system in Escherichia coli
  Fried, Journal of bacteriology 2013
  • “...ynjH ygbL yahM iraP ygbK yehS b0594 b1760 b2738 b0327 b0382 b2737 b2124 110 740 130 210 330 220 1,680 60 1,860 340 580 1,030 690 16,130 0.9 1.3 1.4 1.5 1.6 1.7...”

CS401_RS01055 DUF1456 family protein from Fusobacterium vincentii
2 alignments in 3:156 / 156 (87.2%), covering up to 100.0% of PF07308, 166.9 bits

• Porphyromonas gingivalis diffusible signaling molecules enhance Fusobacterium nucleatum biofilm formation via gene expression modulation
  Yamaguchi-Kuroda, Journal of oral microbiology 2023
  • “...Ribonucleotide-diphosphate reductase subunit beta 1.677 CS401_RS07725 Hypothetical protein 1.637 CS401_RS08570 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein 1.635 CS401_RS01055 DUF1456 family protein 1.615 CS401_RS09170 thiol:disulfide interchange protein 1.579 CS401_RS06365 Hypothetical protein 1.573 CS401_RS05800 ATP-dependent DNA helicase RecG 1.549 CS401_RS08910 Osmolarity sensor protein EnvZ 1.547 CS401_RS00170 glutamate dehydrogenase 1.535 *co/mono:...”

Or search for genetic data about PF07308 in the Fitness Browser