Family Search for PF07350 (Gig2-like)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF07350 hits 12 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PADG_07412 uncharacterized protein from Paracoccidioides brasiliensis Pb18
C1GJH6 DUF1479 domain protein from Paracoccidioides brasiliensis (strain Pb18)
Aligns to 42:446 / 477 (84.9%), covers 100.0% of PF07350, 574.9 bits

• Effect of Nitrosative Stress on the S-Nitroso-Proteome of Paracoccidioides brasiliensis
  Navarro, Frontiers in microbiology 2020
  • “...PADG_04034 C1G9U8 Chaperone DnaJ 170.91 PADG_06568 C1GH32 Uncharacterized protein 164.77 PADG_05893 C1GF57 Uncharacterized protein 160.31 PADG_07412 C1GJH6 Uncharacterized protein 144.24 PADG_02214 C1G248 4-aminobutyrate aminotransferase 133.92 PADG_05281 C1GDE5 Uncharacterized protein 132.09 PADG_01871 C1G4K5 Uncharacterized protein 119.42 PADG_05058 C1GBQ7 Chorismate mutase 110.77 PADG_07014 C1GIC8 Uncharacterized protein 107.76 PADG_08191...”
• Effect of Nitrosative Stress on the S-Nitroso-Proteome of Paracoccidioides brasiliensis
  Navarro, Frontiers in microbiology 2020
  • “...C1G9U8 Chaperone DnaJ 170.91 PADG_06568 C1GH32 Uncharacterized protein 164.77 PADG_05893 C1GF57 Uncharacterized protein 160.31 PADG_07412 C1GJH6 Uncharacterized protein 144.24 PADG_02214 C1G248 4-aminobutyrate aminotransferase 133.92 PADG_05281 C1GDE5 Uncharacterized protein 132.09 PADG_01871 C1G4K5 Uncharacterized protein 119.42 PADG_05058 C1GBQ7 Chorismate mutase 110.77 PADG_07014 C1GIC8 Uncharacterized protein 107.76 PADG_08191 C1GMA5...”

AO090020000531 No description from Aspergillus oryzae RIB40
Aligns to 1:363 / 393 (92.4%), covers 88.5% of PF07350, 540.2 bits

• Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae
  Inglis, BMC microbiology 2013
  • “...AO090020000366 - AO090020000387 ECS, FA IGD, FA AO090020000527 cluster AO090020000527 AO090020000515 - AO090020000535 AO090020000521 - AO090020000531 - n/a n/a AO090023000082 cluster AO090023000082 AO090023000097 - AO090023000072 AO090023000096 - AO090023000074 AO090023000082 - AO090023000077 ECS FA AO090023000444 cluster AO090023000444 AO090023000450 - AO090023000444 AO090023000450 - AO090023000436 AO090023000447 - AO090023000443 FA...”

YPO2976 conserved hypothetical protein from Yersinia pestis CO92
Aligns to 7:413 / 415 (98.1%), covers 99.5% of PF07350, 516.4 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...protein 0.527 (0.026) YPTB2623 (flk) YPO2760 putative flagellar assembly regulatory protein. flk 0.549 (0.008) YPTB2699 YPO2976 conserved hypothetical protein 4.448 (< 0.001) 1.458 (0.016) YPTB2704 YPO2981 putative exported protein 1.628 (0.015) YPTB2744 (yfeY) YPO3026 putative lipoprotein 1.604 (0.019) YPTB2753 YPO3031 putative acetyltransferase 1.391 (0.02) YPTB2750 or3477...”

YPTB2699 hypothetical protein from Yersinia pseudotuberculosis IP 32953
Aligns to 7:413 / 415 (98.1%), covers 99.5% of PF07350, 516.4 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...hypothetical protein 0.527 (0.026) YPTB2623 (flk) YPO2760 putative flagellar assembly regulatory protein. flk 0.549 (0.008) YPTB2699 YPO2976 conserved hypothetical protein 4.448 (< 0.001) 1.458 (0.016) YPTB2704 YPO2981 putative exported protein 1.628 (0.015) YPTB2744 (yfeY) YPO3026 putative lipoprotein 1.604 (0.019) YPTB2753 YPO3031 putative acetyltransferase 1.391 (0.02) YPTB2750...”

7twcA / A0A2U2H2N4 Crystal structure of the putative oxidoreductase of duf1479-containing protein family ypo2976 from yersinia pestis bound to caps
Aligns to 9:415 / 416 (97.8%), covers 99.5% of PF07350, 516.3 bits

• Ligand: magnesium ion (7twcA)

YbiU / b0821 DUF1479 domain-containing protein YbiU from Escherichia coli K-12 substr. MG1655 (see paper)
b0821 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 10:419 / 421 (97.4%), covers 99.0% of PF07350, 514.7 bits

• Medium-Chain-Length Fatty Acid Catabolism in Cupriavidus necator H16: Transcriptome Sequencing Reveals Differences from Long-Chain-Length Fatty Acid β-Oxidation and Involvement of Several Homologous Genes
  Strittmatter, Applied and environmental microbiology 2023 (secret)
• Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions
  Orth, BMC systems biology 2012
  • “...(R) IV purC (b2476) 7.00E-16 R05717 (R) IV cysH (b2762) 3.00E-12 R06613 (F) II ybiU (b0821) 1.6 R07164 (R) III ydiJ (b1687) 0.9 R07165 (R) III ydiJ (b1687) 0.9 R07176 (R) IV global orphan R07463 (F) IV dadA (b1189) 2.00E-18 R07613 (R) II ydbL (b0600) 7.00E-26...”
  • “...was added to compliment a thyA (b2827) deletion. A currently uncharacterized E. coli gene, ybiU (b0821), was identified by BLASTp as a candidate gene for this reaction, providing a testable hypothesis for the function of this gene. The other category II feasible solution added a new...”

APECO2_RS10075 DUF1479 domain-containing protein from Escherichia coli APEC O2-211
Aligns to 9:417 / 419 (97.6%), covers 99.3% of PF07350, 504.3 bits

• Role of LsrR in the regulation of antibiotic sensitivity in avian pathogenic Escherichia coli
  Yu, Poultry science 2020
  • “...Gene Product log 2 FC APECO2_RS10070 lsrA Autoinducer 2 ABC transporter ATP-binding protein LsrA 5.36 APECO2_RS10075 lsrC Autoinducer 2 ABC transporter permease LsrC 5.74 APECO2_RS10090 lsrF 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase LsrF 4.61 APECO2_RS10085 lsrB MULTISPECIES: autoinducer 2 ABC transporter substrate-binding protein 4.30 APECO2_RS10095 lsrG MULTISPECIES: autoinducer 2-degrading protein...”

2csgA / Q8ZQM7 Crystal structure of the putative oxidoreductase from salmonella typhimurium lt2
Aligns to 8:417 / 417 (98.3%), covers 98.8% of PF07350, 502.6 bits

• Ligand: fe (iii) ion (2csgA)

OGAPODRAFT_16706 uncharacterized protein from Ogataea polymorpha
Aligns to 9:422 / 467 (88.7%), covers 99.5% of PF07350, 462.2 bits

• Full-Length Genome of an Ogataea polymorpha Strain CBS4732 ura3Δ Reveals Large Duplicated Segments in Subtelomeric Regions
  Chang, Frontiers in microbiology 2022
  • “...* SV2-NCYC495 OGAPO_13497/ * /HPODL_00892 Basic amino-acid permease OGAPODRAFT_76936 SV2-NCYC495 -/OGAPODRAFT_76936/HPODL_00891 Transcriptional activator protein DAL81 OGAPODRAFT_16706 SV2-NCYC495 -/OGAPODRAFT_16706/HPODL_00890 DUF1479-domain-containing protein OGAPODRAFT_37951 SV2-NCYC495 -/OGAPODRAFT_37951/HPODL_02394 MFS domain-containing protein OGAPODRAFT_93168 SV3-NCYC495 -/OGAPODRAFT_93168/HPODL_04518 MFS domain-containing protein OGAPODRAFT_15973 * SV3-NCYC495 OGAPO_15973/ * /HPODL_04520 MFS sugar transporter OGAPODRAFT_75778 SV3-NCYC495 -/OGAPODRAFT_75778/HPODL_04517 Adenosine deaminase...”

NCU05846 hypothetical protein from Neurospora crassa OR74A
Aligns to 192:675 / 839 (57.7%), covers 99.8% of PF07350, 460.6 bits

• Broad Substrate-Specific Phosphorylation Events Are Associated With the Initial Stage of Plant Cell Wall Recognition in Neurospora crassa
  Horta, Frontiers in microbiology 2019
  • “...NCU03164 pc 3 NCU07788 COL-26/BglR 6 NCU04615 SLN1 3 NCU07705 CLR-1 2 NCU07221 HCP-1 9 NCU05846 CLR-3 3 NCU01895 RRG-1 3 NCU02413 RRG-2 3 G-protein NCU00440 GNB-1 2 NCU07378 STK-12 26 NCU05810 CPC-2 1 NCU00441 PhLP1 3 Serine/Threonine protein Kinase NCU02556 HAT-2 1 NCU03238 GPR-9 1...”
  • “...known for CLR-2 ( Coradetti et al., 2012 ). Although not a transcription factor, CLR-3 (NCU05846) is still highly relevant for cellulase regulation ( Huberman et al., 2017 ) and was found to be phosphorylated in two regions and three potential sites ( Supplementary Datasheet S2...”
• Network of nutrient-sensing pathways and a conserved kinase cascade integrate osmolarity and carbon sensing in Neurospora crassa
  Huberman, Proceedings of the National Academy of Sciences of the United States of America 2017
  • “...mutations in conserved regions in a hypothetical protein, NCU05846 (Fig. S2A). These were the only mutations in coding regions present exclusively in progeny...”
  • “...strain carrying a full deletion of NCU05846 exhibited an identical cellulase-secretion phenotype, which was E8666 | www.pnas.org/cgi/doi/10.1073/pnas.1707713114...”
• Direct target network of the Neurospora crassa plant cell wall deconstruction regulators CLR-1, CLR-2, and XLR-1
  Craig, mBio 2015
  • “...domain NCU02916 a gh61-3 Polysaccharide monooxygenase (AA9 family) NCU05057 a gh7-1 Endoglucanase NCU05574 Acetyltransferase domain NCU05846 a Domain of unknown function DUF1479 NCU05863 ATPase (AAA) domain NCU05864 a Hypothetical protein NCU05955 a gh74-1 Cel74a; xyloglucanase NCU06704 Ribosome-associated membrane protein RAMP4 NCU07190 a gh6-3 Glycosylhydrolase family 6...”
  • “...ce1 - 1 Acetyl xylan esterase NCU05057 a gh7-1 Endoglucanase NCU05121 gh45-1 Glycosylhydrolase family 45 NCU05846 a DUF1479 NCU05864 a Hypothetical protein NCU05924 gh10-1 Endo-1,4--xylanase NCU05955 a , c gh74-1 Cel74a; xyloglucanase NCU05956 c gh2-2 -Galactosidase NCU06277 Microtubule-associated protein domain NCU07143 6-Phosphogluconolactonase NCU07190 a gh6-3 Exoglucanase...”

CD36_08720 conserved hypothetical protein from Candida dubliniensis CD36
Aligns to 13:434 / 474 (89.0%), covers 99.8% of PF07350, 441.2 bits

• Global transcriptome sequencing identifies chlamydospore specific markers in Candida albicans and Candida dubliniensis
  Palige, PloS one 2013
  • “...7.04 orf19.3885 CD36_31810 3.93 7.48 orf19.4688 DAG7 CD36_41020 3.70 4.58 orf19.2457 CD36_05580 3,44 4.83 orf19.4783 CD36_08720 2.96 5.74 orf19.6569 CD36_71400 2.84 5.21 orf19.4264 CD36_52290 2.84 5.03 orf19.4459 CD36_03600 2.74 5.16 orf19.6920 CD36_71220 2.64 4.82 orf19.2506 CD36_80940 2.48 4.55 orf19.4953 CD36_12310 2.36 4.94 orf19.6788 CD36_87050 2.07 4.49...”

6akzA / A0A1D8PEJ2 Crystal structure of glcnac inducible gene 2, gig2 (duf1479) from candida albicans (see paper)
Aligns to 4:409 / 451 (90.0%), covers 99.8% of PF07350, 429.3 bits

• Ligand: fe (iii) ion (6akzA)

Or search for genetic data about PF07350 in the Fitness Browser