Family Search for PF07351 (DUF1480)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF07351 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
YPTB2387 hypothetical protein from Yersinia pseudotuberculosis IP 32953
YPO1694 conserved hypothetical protein from Yersinia pestis CO92
Aligns to 1:78 / 79 (98.7%), covers 100.0% of PF07351, 160.5 bits
STY1982 conserved hypothetical protein from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 1:78 / 79 (98.7%), covers 100.0% of PF07351, 147.1 bits
- Transcriptomic study of Salmonella enterica subspecies enterica serovar Typhi biofilm
Chin, BMC genomics 2017 - “...yaiA Hypothetical protein 2.48198 5.00E-05 0.001837 hupA Histone like DNA-binding protein HU-alpha 2.59176 5.00E-05 0.001837 STY1982 Hypothetical protein 2.61628 5.00E-05 0.001837 STY1323 Hypothetical protein 2.67081 5.00E-05 0.001837 ompC Outer membrane protein C 2.75117 5.00E-05 0.001837 lppA Major outer membrane lipoprotein 2.93078 5.00E-05 0.001837 STY1938 Hypothetical protein...”
STM1851 putative cytoplasmic protein from Salmonella typhimurium LT2
SEN1186 hypothetical protein from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 1:78 / 79 (98.7%), covers 100.0% of PF07351, 146.6 bits
- Stress response, amino acid biosynthesis and pathogenesis genes expressed in Salmonella enterica colonizing tomato shoot and root surfaces
Han, Heliyon 2020 - “...Stress-induced bacterial acidophilic repeat motif 3.3 0.002 STM1808 STM1808 Putative cytoplasmic protein; NsrR regulon 0.008 STM1851 STM1851 hypothetical protein 1.3 0.003 1.6 0.003 STM05615 STM05615 hypothetical protein 2.2 0.002 2.0 0.003 STM4271 STM4271 murein hydrolase regulator LrgA 1.4 0.006 2.2 0.003 STM4552 STM4552 putative inner membrane...”
- A connecter-like factor, CacA, links RssB/RpoS and the CpxR/CpxA two-component system in Salmonella
Kato, BMC microbiology 2012 - “...no homology to any protein of known function, as well as the 3 region of STM1851 and the 5 region of pphA (Figure 1B ). Expression of STM1852 from tetracycline- (Figure 1C ) or L-arabinose- (Figure 1D ) inducible promoters recapitulated the increase in the -galactosidase...”
- “...the PcacA-lac 1 strain contains a DNA fragment encompassing the 3 region (80 bp) of STM1851 and the intergenic region (110 bp) between STM1851 and cacA , whereas the PcacA-lac 2 strain harbors only the intergenic region (110 bp) between STM1851 and cacA preceding the lacZ...”
- Genomic profiling of iron-responsive genes in Salmonella enterica serovar typhimurium by high-throughput screening of a random promoter library
Bjarnason, Journal of bacteriology 2003 - “...12, 2017 by University of California, Berkeley yfcZ STM1851 yhcO STM4448 Function(s) 4982 BJARNASON ET AL. 31. Masse, E., N. Majdalani, and S. Gottesman....”
- Rapid identification of novel antigens of Salmonella Enteritidis by microarray-based immunoscreening
Danckert, Mikrochimica acta 2014 - “...a highly conserved DNA primase that shows homology in all bacteria. Moreover, two hypothetical proteins (SEN1186 and SEN2464) were detected with no known function rendering these candidates highly attractive for further investigations. SEN2464 is additionally described as a methionine tRNA cytidine acetyltransferase providing precise recognition of...”
- “...as a virulence factor contributing to enteric infection [ 29 ]. Last but not least, SEN1186 is a DNA mismatch endonuclease located in the cytoplasm. Table 1 List of all identified immunogenic proteins from cDNA expression library screening. The candidates are listed according to their locus...”
SENTW_1340 YebV family protein from Salmonella enterica subsp. enterica serovar Weltevreden str.
Aligns to 1:77 / 78 (98.7%), covers 97.4% of PF07351, 144.8 bits
SL1344_1780, STM14_2239 YebV family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Aligns to 1:77 / 78 (98.7%), covers 97.4% of PF07351, 144.3 bits
- Fatty Acid Homeostasis Tunes Flagellar Motility by Activating Phase 2 Flagellin Expression, Contributing to Salmonella Gut Colonization
Hoshino, Infection and immunity 2022 (secret) - Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation
Lago, Scientific reports 2017 - “...of identified homologs in other bacterial genomes, prompted us to re-annotate the start codon of STM14_2239, STM14_2409, and STM14_5481 (Table 1 , Supplementary Fig. S5 , Supplementary Dataset S1 ). The uncharacterized ORFs ymdF and STM14_1829 are paralogous to yciG (Table 1 , Supplementary Fig. S6...”
- “...3TM fragments 84 ymgE 1114 Bacteria and Archaea STM14_2188 45 Yes Enterobacteriaceae STM14_2189 32 Salmonella STM14_2239 Start codon re-annotated, 88% identity with E . coli YebV, DUF1480 IPR009950 78 Yes yebV 13, 14 Enterobacteriaceae STM14_2405 DUF2525 IPR019669 75 Yes yodD 1114 Enterobacteriaceae STM14_2409 Start codon re-annotated,...”
- A Highly Effective Component Vaccine against Nontyphoidal Salmonella enterica Infections
Ferreira, mBio 2015 - “...and lysed in buffer A (20mM Tris, 500mM NaCl, 2mM MgCl 2 ; pH8) for SL1344_1780 and SL1344_2251 or buffer B (40mM Tris, 150mM NaCl, 3mM MgCl 2 , 10mM imidazole, 0.02% NaN 3 ; pH8) for all proteins except for SL1780 and SL2251. Buffers A...”
ECs2546 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 5:82 / 83 (94.0%), covers 97.4% of PF07351, 144.1 bits
YebV / b1836 DUF1480 domain-containing protein YebV from Escherichia coli K-12 substr. MG1655 (see paper)
b1836 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
DR76_3007 YebV family protein from Escherichia coli ATCC 25922
Aligns to 1:77 / 78 (98.7%), covers 97.4% of PF07351, 144.1 bits
- 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
, Haematologica 2013 - The HU regulon is composed of genes responding to anaerobiosis, acid stress, high osmolarity and SOS induction
Oberto, PloS one 2009 - “...1.06 1 1.25 3.82 0.89 1 1.37 1.44 0.52 a activator of ntrL gene yebV b1836 yebV 1 0.81 1.17 1.7 1 1.1 1.35 1.73 1 2 1.93 0.64 a, h hypothetical protein otsA b1896 otsBA 1 2.53 3.08 0.75 1 1.34 1.81 0.25 1 1.71...”
- Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states
Fong, Genome research 2005 - “...n b1045, b1471, b1784, b2086, b2327, b3293, b1141, b1566, b1836, b2263, b2742, b4078, metU, alaW, thrV, flgN, wrbA, sodC, otsB, yehV, yjhH, flgM, flgD, ycfN,...”
- Gene expression profiling of the pH response in Escherichia coli
Tucker, Journal of bacteriology 2002 - “...cbpA b3510 hdeAc b0329 yahO b1003 yccJ b1597 asrc b1724 b1836 b3491 b1004 b2885 b4186 b0485 b0486 b0897 b1493 b3517 b3507 b3512 b3515 c ydiZ yebV yhiMc wrbA...”
- Coupling next-generation sequencing to dominant positive screens for finding antibiotic cellular targets and resistance mechanisms in Escherichia coli
Gingras, Microbial genomics 2018 - “...the lipoprotein NplE (which was also highlighted by the CRO screen) and a hypothetical protein (DR76_3007), YebV (Fig. S2). The product of the yebV gene has the Pfam motif DUF1480 of unknown function and is part of a family of enterobacterial proteins of about 80 amino...”
- “...DR76_2706 DR76_2709 2894751..2896439 DR76_2709 nlpE Lipoprotein NlpE 2 1 GEN 1 7277 DR76_3002 DR76_3009 3214843..3222301 DR76_3007 yebV Hypothetical protein 2 4 2 6206 DR76_2705 DR76_2716 2894138..2902771 DR76_2709 nlpE Lipoprotein NlpE 2 1 LEV 1 330375 DR76_2505 DR76_2509 2666131..2669603 DR76_2506 rob Right origin-binding protein 2 2 2...”
PMI1011 hypothetical protein from Proteus mirabilis HI4320
PMI_RS04910 DUF1480 family protein from Proteus mirabilis HI4320
Aligns to 1:79 / 80 (98.8%), covers 100.0% of PF07351, 102.5 bits
Or search for genetic data about PF07351 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory