Family Search for PF07356 (DUF1481)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF07356 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

AWY96_RS11255 DUF1481 domain-containing protein from Serratia plymuthica
Aligns to 34:219 / 223 (83.4%), covers 100.0% of PF07356, 252.6 bits

• Regulation of indole-3-acetic acid biosynthesis and consequences of auxin production deficiency in Serratia plymuthica
  Rico-Jiménez, Microbial biotechnology 2023
  • “...AWY96_RS08510 Fimbria/pilus outer membrane usher protein 2.21 SCP Unknown function AWY96_RS00800 Hypothetical protein 2.23 Unclassified AWY96_RS11255 Hypothetical protein 2.05 Unclassified AWY96_RS12465 Hypothetical protein 2.01 Unclassified AWY96_RS18820 Putative recombinase/integrase 2.74 Unclassified AWY96_RS21605 Hypothetical protein 4.64 Unclassified AWY96_RS24415 Hypothetical protein 2.01 Unclassified Upregulated Metabolism AWY96_RS04070 grcA Autonomous glycyl...”

YjaH / b4001 DUF1481 domain-containing protein YjaH from Escherichia coli K-12 substr. MG1655 (see paper)
b4001 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 42:227 / 231 (80.5%), covers 100.0% of PF07356, 246.4 bits

• Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment
  Tucker, BMC microbiology 2007
  • “...bios. cytoplasm present cpxP b3913/14 -2.50 0.0002 Cpx extracytoplasmic stress response repressor periplasmic present yjaH b4001 -2.32 0.0021 orf, hypothetical protein present zraP b4002 -3.84 0.0000 zinc binding periplasmic protein, responds to Zn & Pb periplasm present Ave. Fold Change and Average p-value columns are the...”

VV93_v1c28640 DUF1481 domain-containing protein from Vibrio vulnificus
Aligns to 32:226 / 230 (84.8%), covers 99.5% of PF07356, 185.5 bits

• Genome analysis of clinical genotype Vibrio vulnificus isolated from seafood in Mangaluru Coast, India provides insights into its pathogenicity
  Prithvisagar, The veterinary quarterly 2023
  • “...VV93_v1c14430 0.030783 0.358238 0.41394 38 VV93_v1c29010 0.025644 0.350187 0.442943 37 VV93_v1c13620 0.008062 0.347261 0.539039 37 VV93_v1c28640 0.007351 0.345656 0.522523 37 VV93_v1c45320 0.127174 0.373253 0.106349 36 VV93_v1c41410 0.027762 0.359962 0.418487 35 VV93_v1c11280 0.003939 0.338156 0.604278 34 VV93_v1c09620 0.054645 0.369931 0.4375 33 bamC 0.048895 0.332149 0.387097 31 VV93_v1c21290...”
  • “...with only few associated with cyclic-di-gmp binding (VV93_v1c00420, VV93_v1c08230, VV93_v1c09620, VV93_v1c13620, VV93_v1c14430, VV93_v1c15230, VV93_v1c21290, VV93_v1c22970, VV93_v1c28640, VV93_v1c34010, VV93_v1c37740, VV93_v1c41410), sporulation-like domain, and lipoate-protein ligase activity (VV93_v1c00420, VV93_v1c08230, VV93_v1c13620, VV93_v1c15230, VV93_v1c22970, VV93_v1c28640, VV93_v1c34010, VV93_v1c37740), AsmA, and leucine-rich repeat domain superfamily (VV93_v1c08230, VV93_v1c34010, VV93_v1c37740), thiamine kinase, and ycfl-like...”

Or search for genetic data about PF07356 in the Fitness Browser