Family Search for PF07369 (DUF1488)

PF07369.11 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YrdB / b3280 DUF1488 domain-containing protein YrdB from Escherichia coli K-12 substr. MG1655 (see paper)
b3280 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 5:84 / 85 (94.1%), covers 100.0% of PF07369, 106.1 bits

• Transcriptomic analysis of Escherichia coli O157:H7 and K-12 cultures exposed to inorganic and organic acids in stationary phase reveals acidulant- and strain-specific acid tolerance responses
  King, Applied and environmental microbiology 2010
  • “...b3282 b0006 b0224 b1016 b1847 b2152 b3096 b3280 b3546 b3618 b4060 Signal transduction mechanisms Transcription Predicted methyltransferase Predicted ribosome...”
• Rapid identification and mapping of insertion sequences in Escherichia coli genomes using vectorette PCR
  Zhong, BMC microbiology 2004
  • “...P P P IS3 -c 2460317 b2351 + 489* 1642 P P IS3 -d 3427623 b3280 - 953 646 P P IS3 -e 3776882 b3604 - 1435 935* P P P IS3 -f 4466303 b4242 - 640 935* P P P IS5 -a 1102866 b1040-b1041 +...”
• Genome-wide expression profiling in Escherichia coli K-12
  Richmond, Nucleic acids research 1999
  • “...DNA topoisomerase type I, protein b3635 mutM 5.4 12.2 b3280 yrdB 5.3 1.3 ORF, hypothetical protein b4239 treC 5.2 5.8 Trehalase 6-P hydrolase b2779 eno -5.0...”

ECs4146 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 5:84 / 85 (94.1%), covers 100.0% of PF07369, 101.9 bits

• Transcriptomic analysis of Escherichia coli O157:H7 and K-12 cultures exposed to inorganic and organic acids in stationary phase reveals acidulant- and strain-specific acid tolerance responses
  King, Applied and environmental microbiology 2010
  • “...ECs3398 ECs4148 ECs0006 ECs0251 ECs1263 ECs2557 ECs3044 ECs3978 ECs4146 ECs4425 ECs4496 ECs5042 b3283 b3700 b2571 b1422 b2531 b3067 b3649 b3783 b4063 b1211...”

BCAM1480 hypothetical protein (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 8:87 / 96 (83.3%), covers 98.8% of PF07369, 99.9 bits

• Understanding the Pathogenicity of Burkholderia contaminans, an Emerging Pathogen in Cystic Fibrosis
  Nunvar, PloS one 2016
  • “...regulator WR30_RS23390 BCAM1483 BMULJ_04241 18.8 9.3 10.9 Co-regulated genes protein of unknown function (DUF1488) WR30_RS23375 BCAM1480 ortholog absent 44.3 5.1 20.1 hypothetical protein WR30_RS23380 BCAM1481 BMULJ_04240 22.2 2.5 12.2 hypothetical protein WR30_RS23385 BCAM1482 ortholog absent 32.7 3.1 3.6 putative universal stress protein WR30_RS23455 BCAM1495 BMULJ_04252 38.5...”

WR30_RS23375 DUF1488 domain-containing protein from Burkholderia contaminans FFH2055
Aligns to 8:87 / 96 (83.3%), covers 98.8% of PF07369, 98.7 bits

• Understanding the Pathogenicity of Burkholderia contaminans, an Emerging Pathogen in Cystic Fibrosis
  Nunvar, PloS one 2016
  • “...transcriptional regulator WR30_RS23390 BCAM1483 BMULJ_04241 18.8 9.3 10.9 Co-regulated genes protein of unknown function (DUF1488) WR30_RS23375 BCAM1480 ortholog absent 44.3 5.1 20.1 hypothetical protein WR30_RS23380 BCAM1481 BMULJ_04240 22.2 2.5 12.2 hypothetical protein WR30_RS23385 BCAM1482 ortholog absent 32.7 3.1 3.6 putative universal stress protein WR30_RS23455 BCAM1495 BMULJ_04252...”

SC3336 putative periplasmic protein (NCBI) from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 5:84 / 85 (94.1%), covers 100.0% of PF07369, 97.3 bits

• Molecular genetics of the flgI region and its role in flagellum biosynthesis in Caulobacter crescentus
  Khambaty, Journal of bacteriology 1992
  • “...45 27 27 27 13 SC1591 SC2089 SC2090 SC3336 SC3337 SC3338 SC3529 str-142 hunC145 str-152 flgII41 hunCl45::Tn5 flgI141 hunCl15::TnS syn-1000 cheL126 recA526...”
  • “...(flgIJ41 recA526zzz::TnS), SC3338 (flg1165 recA526zz=::Tn5), SC3336 (cheL126 recA526zzz::TnS), SC1123 (flbYl9O::Tn5 cysB102 str-152), and SC3529 (flbY665::Tn5...”

BCAM2209 hypothetical protein (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 3:82 / 95 (84.2%), covers 97.6% of PF07369, 90.9 bits

• NtrC-dependent control of exopolysaccharide synthesis and motility in Burkholderia cenocepacia H111
  Liu, PloS one 2017
  • “...Methyl-accepting chemotaxis protein -2.9 I35_5753 BCAM1927 Membrane-fusion protein -3.1 I35_6093 BCAM2207 Hypothetical protein -2.5 I35_6098 BCAM2209 Hypothetical protein -3.0 I35_6344 BCAM2444 Conserved domain protein -4.1 I35_6461 BCAM2564 Aerotaxis sensor receptor protein -4.9 I35_6515 BCAM2618 Histidine ABC transporter, histidine-binding periplasmic protein hisJ -4.4 I35_6573 BCAM2679 Hypothetical protein...”

BMULJ_05610 hypothetical protein (RefSeq) from Burkholderia multivorans ATCC 17616
Aligns to 3:82 / 91 (87.9%), covers 100.0% of PF07369, 90.7 bits

• Understanding the Pathogenicity of Burkholderia contaminans, an Emerging Pathogen in Cystic Fibrosis
  Nunvar, PloS one 2016
  • “...universal stress protein WR30_RS16575 BCAM0276 BMULJ_05609 40.2 3.3 38.3 protein of unknown function WR30_RS16580 BCAM0277 BMULJ_05610 40.5 3.8 32.9 putative heat shock protein WR30_RS16585 BCAM0278 BMULJ_05611 230.7 33.1 328.6 hypothetical protein WR30_RS16590 BCAM0279 BMULJ_05612 81.6 3.9 50.2 putative phospholipid-binding protein WR30_RS16595 BCAM0280 BMULJ_05613 101.8 18.4 85.6...”

WR30_RS16580 DUF1488 domain-containing protein from Burkholderia contaminans FFH2055
Aligns to 3:82 / 91 (87.9%), covers 100.0% of PF07369, 90.4 bits

• Understanding the Pathogenicity of Burkholderia contaminans, an Emerging Pathogen in Cystic Fibrosis
  Nunvar, PloS one 2016
  • “...39.7 putative universal stress protein WR30_RS16575 BCAM0276 BMULJ_05609 40.2 3.3 38.3 protein of unknown function WR30_RS16580 BCAM0277 BMULJ_05610 40.5 3.8 32.9 putative heat shock protein WR30_RS16585 BCAM0278 BMULJ_05611 230.7 33.1 328.6 hypothetical protein WR30_RS16590 BCAM0279 BMULJ_05612 81.6 3.9 50.2 putative phospholipid-binding protein WR30_RS16595 BCAM0280 BMULJ_05613 101.8...”

SO0041 conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1
Aligns to 5:90 / 91 (94.5%), covers 100.0% of PF07369, 87.5 bits

• Generation and validation of a Shewanella oneidensis MR-1 clone set for protein expression and phage display
  Gao, PloS one 2008
  • “...predicted molecular weights (kDa) of the fusion proteins are: SO0037, 40.7; SO0038, 65.1; SO0040, 61.2; SO0041, 41.4; SO0044, 39.7; SO0047, 75.1; SO0049, 86.9; SO0051, 34.3; SO0053, 66.8; SO0054, 74.2; SO0055, 94.7; SO0056, 59.3; SO0057, 79.9; SO0059, 57.1. B. Identical to A. but with a longer film...”

BCAM0277 hypothetical protein (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 3:82 / 91 (87.9%), covers 98.8% of PF07369, 87.4 bits

• Understanding the Pathogenicity of Burkholderia contaminans, an Emerging Pathogen in Cystic Fibrosis
  Nunvar, PloS one 2016
  • “...putative universal stress protein WR30_RS16575 BCAM0276 BMULJ_05609 40.2 3.3 38.3 protein of unknown function WR30_RS16580 BCAM0277 BMULJ_05610 40.5 3.8 32.9 putative heat shock protein WR30_RS16585 BCAM0278 BMULJ_05611 230.7 33.1 328.6 hypothetical protein WR30_RS16590 BCAM0279 BMULJ_05612 81.6 3.9 50.2 putative phospholipid-binding protein WR30_RS16595 BCAM0280 BMULJ_05613 101.8 18.4...”
• Burkholderia cenocepacia differential gene expression during host-pathogen interactions and adaptation to the host environment
  O'Grady, Frontiers in cellular and infection microbiology 2011
  • “...Hypothetical protein 1.95 BCAM0275 Conserved hypothetical protein 1.60 d BCAM0275a Conserved hypothetical protein 1.70 d BCAM0277 Conserved hypothetical protein 1.72 c BCAM0303 ABC transporter ATP-binding membrane protein 1.62 BCAM0368 Putative branched-chain amino acid transport 1.52 BCAM0414 Conserved hypothetical protein 2.01 d BCAM0415 Putative betaine aldehyde dehydrogenase...”
• Use of suppression-subtractive hybridization to identify genes in the Burkholderia cepacia complex that are unique to Burkholderia cenocepacia
  Bernier, Journal of bacteriology 2005
  • “...BCAM0148 BCAM0149 BCAM0066 BCAM0073 BCAM0074 BCAM0163 BCAM0164 BCAM0275a BCAM0277 BCAM0513 BCAL2463 BCAL2969 BCAL1302 BCAL1293 CDS no. in the J2315 genome 3 2 2...”

Or search for genetic data about PF07369 in the Fitness Browser