PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF07411 (DUF1508)

PF07411.12 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

ECs2888 hypothetical protein (NCBI) from Escherichia coli O157:H7 str. Sakai
Q8X7I0 UPF0339 protein YegP from Escherichia coli O157:H7
2 alignments in 10:108 / 110 (87.3%), covering up to 100.0% of PF07411, 150.7 bits

YegP / b2080 DUF1508 domain-containing protein YegP from Escherichia coli K-12 substr. MG1655 (see paper)
b2080 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
2 alignments in 10:108 / 110 (87.3%), covering up to 100.0% of PF07411, 149.9 bits

PA0329 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
2 alignments in 10:108 / 110 (87.3%), covering up to 100.0% of PF07411, 132.0 bits

PM0519 unknown (NCBI ptt file) from Pasteurella multocida subsp. multocida str. Pm70
2 alignments in 11:109 / 114 (84.2%), covering up to 100.0% of PF07411, 130.7 bits

HVO_2922 hypothetical protein (RefSeq) from Haloferax volcanii DS2
Aligns to 11:59 / 60 (81.7%), covers 100.0% of PF07411, 83.0 bits

APL_0643 hypothetical protein (NCBI) from Actinobacillus pleuropneumoniae L20
Aligns to 8:56 / 61 (80.3%), covers 100.0% of PF07411, 74.7 bits

Atu0232 hypothetical protein (RefSeq) from Agrobacterium tumefaciens str. C58 (Cereon)
Aligns to 9:56 / 62 (77.4%), covers 100.0% of PF07411, 73.9 bits

BAB1_0991 hypothetical protein (NCBI) from Brucella melitensis biovar Abortus 2308
Aligns to 8:55 / 56 (85.7%), covers 97.9% of PF07411, 60.0 bits

lp_2443 prophage Lp2 protein 14 (NCBI ptt file) from Lactobacillus plantarum WCFS1
Aligns to 93:138 / 143 (32.2%), covers 81.2% of PF07411, 48.9 bits

Or search for genetic data about PF07411 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory