Family Search for PF07433 (DUF1513)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF07433 hits 12 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SPO0090 DUF1513 domain-containing protein from Ruegeria pomeroyi DSS-3
Aligns to 56:355 / 358 (83.8%), covers 99.3% of PF07433, 411.3 bits

• Transcriptional changes underlying elemental stoichiometry shifts in a marine heterotrophic bacterium
  Chan, Frontiers in microbiology 2012
  • “.... Locus tag Gene Product Fold-change ratio a Probe 1 Probe 2 C-LIMITED (68 GENES) SPO0090 Hypothetical protein 5.3 SPO0107 recQ ATP-dependent DNA helicase 1.0 6.3 SPO0120 Hypothetical protein 3.9 SPO0149 dnaA Chromosomal replication initiation protein 16.5 1.2 SPO0171 fliR Flagellar biosynthetic protein 1.3 6.7 SPO0183...”

VC1267 hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 66:360 / 360 (81.9%), covers 99.3% of PF07433, 404.5 bits

• Roles of the sodium-translocating NADH:quinone oxidoreductase (Na+-NQR) on vibrio cholerae metabolism, motility and osmotic stress resistance
  Minato, PloS one 2014
  • “...down VC1070 phosphatase, putative 1.752 down 1.591 down VC1124 hypothetical protein 1.561 down 1.519 down VC1267 hypothetical protein 1.761 down 1.515 down VC1312 alanine racemase 1.625 down 1.767 down VC1454 RstA1 protein 3.940 down 1.617 down VC1461 colonization factor 2.246 down 2.188 down VC1777 sialic acid-specific...”
• Iron and fur regulation in Vibrio cholerae and the role of fur in virulence
  Mey, Infection and immunity 2005
  • “...three ORFs of unknown function downstream of irpA, VC1265 to VC1267, were also induced in low iron and in the fur mutant (Table 2). It is unclear whether these...”
  • “...4.1 Unknown function VC0091 VC1264 VC1265 VC1266 VC1267 VC1543 irpA Putative O-methyl transferase for polyketide biosynthesis, COG3315 Function unknown, COG3487...”

PP0908 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 60:365 / 365 (83.8%), covers 99.3% of PF07433, 393.8 bits

• UEG Week 2023 Poster Presentations
  , United European gastroenterology journal 2023

RSP_1543 hypothetical protein from Rhodobacter sphaeroides 2.4.1
Aligns to 55:352 / 352 (84.7%), covers 100.0% of PF07433, 388.7 bits

• IscR of Rhodobacter sphaeroides functions as repressor of genes for iron-sulfur metabolism and represents a new type of iron-sulfur-binding protein
  Remes, MicrobiologyOpen 2015
  • “...(ferrichrome) transporter, fused inner membrane subunits RSP_1440 0.93 TonB dependent, hydroxamate-type ferrisiderophore, outer membrane receptor RSP_1543 0.72 Hypothetical protein RSP_1544 0.92 Hypothetical signal peptide protein RSP_1545 (0.59) Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites RSP_1546 bfr 1.50 Bacterioferritin RSP_1547 bfd 2.30 Probable bacterioferritin-associated ferredoxin...”

PSPTO4369, PSPTO_4369 lipoprotein, putative from Pseudomonas syringae pv. tomato str. DC3000
Aligns to 60:365 / 365 (83.8%), covers 99.3% of PF07433, 384.8 bits

• Proteomic Profiling Reveals Distinct Bacterial Extracellular Vesicle Subpopulations with Possibly Unique Functionality
  McMillan, Applied and environmental microbiology 2023 (secret)
• Identification of a twin-arginine translocation system in Pseudomonas syringae pv. tomato DC3000 and its contribution to pathogenicity and fitness
  Bronstein, Journal of bacteriology 2005
  • “...PSPTO3830 PSPTO3914 PSPTO4078 PSPTO4351 PSPTO4352 PSPTO4369 PSPTO4444a PSPTO4480 PSPTO4858 PSPTO4885 PSPTO5180 PSPTO5316 PSPTO5528 PSPTO5542 PSPTOB0005...”

AO356_18450 outer membrane component of uptake system, probably for ferrous iron from Pseudomonas fluorescens FW300-N2C3
Aligns to 60:365 / 365 (83.8%), covers 99.3% of PF07433, 382.9 bits

• mutant phenotype: PFam PF07433.7 (DUF1513). In a conserved cofit operon with an efeO-like gene (AO356_18455) and an efeB-like gene (AO356_18460). Another efeO-like gene (AO356_05015) is cofit but not nearby.

RHE_CH00301 hypothetical protein from Rhizobium etli CFN 42
Aligns to 65:359 / 365 (80.8%), covers 99.7% of PF07433, 381.9 bits

• Impact of c-di-GMP on the Extracellular Proteome of Rhizobium etli
  Lorite, Biology 2022
  • “...could be identified in different spots, sometimes with opposite trends. For instance, the hypothetical protein RHE_CH00301 was identified in 10 separate spots, 6 with increased abundance (IA) and 4 with reduced abundance (RA) in the LR101 supernatants. Glyceraldehyde 3-phosphate dehydrogenase was identified in four different spots,...”

Pf6N2E2_5616 outer membrane component of uptake system, probably for ferrous iron from Pseudomonas fluorescens FW300-N2E2
Aligns to 60:365 / 365 (83.8%), covers 99.3% of PF07433, 381.8 bits

• mutant phenotype: PFam PF07433.7 (DUF1513). In a conserved cofit operon with an efeO-like gene (Pf6N2E2_5617) and an efeB-like gene (Pf6N2E2_5618). Another efeO-like gene (Pf6N2E2_2853) is cofit but not nearby.

PA4373 hypothetical protein from Pseudomonas aeruginosa PAO1
Q9HW29 DUF1513 domain-containing protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Aligns to 59:364 / 364 (84.1%), covers 99.3% of PF07433, 380.0 bits

• Hypermutator strains of Pseudomonas aeruginosa reveal novel pathways of resistance to combinations of cephalosporin antibiotics and beta-lactamase inhibitors
  Dulanto, PLoS biology 2022
  • “...] makeblastdb command. A BLASTn search was conducted using as queries the intergenic region between PA4373- mexV as well as the complete nucleotide sequence of mexW (PA4375). Similarly, the protein sequence of MexW was used as a query for a BLASTp search in the local protein...”
  • “...the NCBI Pathogen Detection database. (a) Summary of the nucleotide sequence alignment in proximity to PA4373- mexV +/- 10 bases. (b) Amino acid sequence surrounding MexW E36K with the corresponding residue highlighted in orange background. (DOCX) Click here for additional data file. S9 Table Highly disruptive...”
• A Shaving Proteomic Approach to Unveil Surface Proteins Modulation of Multi-Drug Resistant Pseudomonas aeruginosa Strains Isolated From Cystic Fibrosis Patients
  Montemari, Frontiers in medicine 2022
  • “...uptake protein TrkA 0.01 Q9HUE7 PA5022 Uncharacterized protein 100 Q9HUK4 PA4961 Uncharacterized protein 0.01 Q9HW29 PA4373 Uncharacterized protein 0.01 Q9HXR3 PA3729 Uncharacterized protein 0.01 0.01 Q9HZG8 PA3040 Uncharacterized protein 100 Q9HZV2 PA2895 Uncharacterized protein 100 100 Q9I3G7 PA1550 Uncharacterized protein 0.01 Q9I413 PA1331 Uncharacterized protein 100...”
• A Shaving Proteomic Approach to Unveil Surface Proteins Modulation of Multi-Drug Resistant Pseudomonas aeruginosa Strains Isolated From Cystic Fibrosis Patients
  Montemari, Frontiers in medicine 2022
  • “...potassium uptake protein TrkA 0.01 Q9HUE7 PA5022 Uncharacterized protein 100 Q9HUK4 PA4961 Uncharacterized protein 0.01 Q9HW29 PA4373 Uncharacterized protein 0.01 Q9HXR3 PA3729 Uncharacterized protein 0.01 0.01 Q9HZG8 PA3040 Uncharacterized protein 100 Q9HZV2 PA2895 Uncharacterized protein 100 100 Q9I3G7 PA1550 Uncharacterized protein 0.01 Q9I413 PA1331 Uncharacterized protein...”

Pf1N1B4_718 outer membrane component of uptake system, probably for ferrous iron from Pseudomonas fluorescens FW300-N1B4
Aligns to 60:365 / 366 (83.6%), covers 99.3% of PF07433, 378.7 bits

• mutant phenotype: PFam PF07433.7 (DUF1513). In a conserved cofit operon with two efeO-like genes (Pf1N1B4_715,Pf1N1B4_717) and an efeB-like gene (Pf1N1B4_716)

Psest_1156 outer membrane component of uptake system, probably for ferrous iron from Pseudomonas stutzeri RCH2
Aligns to 59:364 / 364 (84.1%), covers 99.0% of PF07433, 371.4 bits

• mutant phenotype: PFam PF07433.7 (DUF1513). In a conserved cofit operon with two efeO-like genes (Psest_1159,Psest_1157) and a efeB-like gene (Psest_1158)

VSAL_I1783 DUF1513 domain-containing protein from Aliivibrio salmonicida LFI1238
VSAL_I1783 putative lipoprotein from Vibrio salmonicida LFI1238
Aligns to 70:371 / 373 (81.0%), covers 99.7% of PF07433, 345.3 bits

• Construction of a fur null mutant and RNA-sequencing provide deeper global understanding of the Aliivibrio salmonicida Fur regulon
  Thode, PeerJ 2017
  • “...6.1 VSAL_II1066 speF ornithine decarboxylase, inducible 7.4 Cell envelope VSAL_I1328 putative membrane associated peptidase 4.4 VSAL_I1783 putative lipoprotein 4.4 VSAL_I1784 putative lipoprotein 5.0 VSAL_I1820 putative lipoprotein 4.0 VSAL_I1864 putative membrane protein 20.1 x VSAL_II0074 membrane protein 67.3 x VSAL_II0868 putative lipoprotein 8.0 x VSAL_II0931 membrane protein...”

Or search for genetic data about PF07433 in the Fitness Browser