Family Search for PF07853 (DUF1648)
PF07853 hits 12 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
ORF1 / CAA68901.1 ORF1 from Streptococcus iniae (see paper)
Aligns to 13:61 / 210 (23.3%), covers 100.0% of PF07853, 74.8 bits
LBYS11_21200 DUF1648 domain-containing protein from Lysinibacillus sp. YS11
Aligns to 23:70 / 164 (29.3%), covers 98.0% of PF07853, 63.0 bits
DET1248 membrane protein, putative from Dehalococcoides ethenogenes 195
Aligns to 13:61 / 221 (22.2%), covers 98.0% of PF07853, 62.3 bits
- SPINE: SParse eIgengene NEtwork linking gene expression clusters in Dehalococcoides mccartyi to perturbations in experimental conditions
Mansfeldt, PloS one 2015 - “...DET1179), SPINE uniquely predicted the iron regulator DET0097, among others (DET0096, DET0138, DET0139, DET0909, DET0910, DET1248, and DET1429), to be connected to solvent toxicity. Because the majority of these additional transcripts maintained a hypothetical annotation, only DET0137 and DET0097 are explored in more detail as potential...”
TK1923 hypothetical protein from Thermococcus kodakaraensis KOD1
Aligns to 130:177 / 264 (18.2%), covers 91.8% of PF07853, 62.2 bits
Rumal_3686 DUF1648 domain-containing protein from Ruminococcus albus 7 = DSM 20455
Aligns to 7:54 / 231 (20.8%), covers 98.0% of PF07853, 57.0 bits
SA0105 hypothetical protein from Staphylococcus aureus subsp. aureus N315
Aligns to 13:61 / 157 (31.2%), covers 87.8% of PF07853, 49.9 bits
- What Happens in the Staphylococcal Nucleoid under Oxidative Stress?
Morikawa, Microorganisms 2019 - “.../ SA0097 AraC/XylS family transcriptional regulator 1.38 sarY SA2091 staphylococcal accessory regulator Y 1.21 / SA0105 hypothetical protein 1.20 / SA1826 pathogenicity island protein (in pathogenicity island, SaPIn1) 1.18 / SA2274 hypothetical protein 1.17 / SA2302 ABC transporter ATP-binding protein 1.12 / SA0087 tfoX N-terminal domain...”
- Transcriptional profiling analysis of the global regulator NorG, a GntR-like protein of Staphylococcus aureus
Truong-Bolduc, Journal of bacteriology 2011 - “...the S. aureus N315 genome, we found two hypothetical ORFs, SA0105 (474 bp) and SA0106 (1,593 bp), which are oriented in the same direction as norG but did not...”
- “...(Basic Local Alignment Search Tool) search indicated that SA0105 (474 bp) is a hypothetical protein that contains a high proportion of hydrophobic residues and...”
- Identification and phenotypic characterization of a beta-lactam-dependent, methicillin-resistant Staphylococcus aureus strain
Goldstein, Antimicrobial agents and chemotherapy 2007 - “...synthase SAV1176 Mu50, conserved hypothetical protein SA0105 N315, hypothetical protein SA1686 COL, histidyl-tRNA synthetase SA1259 N315, dihydrofolate...”
- Global transcriptome analysis of Staphylococcus aureus response to hydrogen peroxide
Chang, Journal of bacteriology 2006 - “...iron-carrying compounds. In particular, COL-SA0099 (sirA), -SA0104, and -SA0105 aroused our attention because they are involved in iron uptake system in S....”
- Comparative genomics of Staphylococcus aureus musculoskeletal isolates
Cassat, Journal of bacteriology 2005 - “...SA0147 SA0148 SA0149 SA0150 SA2418 SA0104 SA0102, SA0105 SA0704 SA0798 SA0098 SA0097 SA0099 SA2010 SA2584 SA2660 Only microarray results are given,...”
SAR0112 putative membrane protein from Staphylococcus aureus subsp. aureus MRSA252
Aligns to 13:61 / 157 (31.2%), covers 87.8% of PF07853, 49.9 bits
YBGB_BACSU / O31460 Uncharacterized membrane protein YbgB from Bacillus subtilis (strain 168) (see paper)
Aligns to 12:60 / 91 (53.8%), covers 95.9% of PF07853, 49.6 bits
KO21_RS13120 SdpI family protein from Listeria monocytogenes
lmo2570 lmo2570 from Listeria monocytogenes EGD-e
Aligns to 10:58 / 204 (24.0%), covers 100.0% of PF07853, 49.6 bits
- Singleton Sequence Type 382, an Emerging Clonal Group of Listeria monocytogenes Associated with Three Multistate Outbreaks Linked to Contaminated Stone Fruit, Caramel Apples, and Leafy Green Salad
Chen, Journal of clinical microbiology 2017 - “...2427859 A G No D G KO21_RS11980, glutamate/gamma-aminobutyrate antiporter 2647562 T C No Y C KO21_RS13120, amidase 2734870 C T Yes KO21_RS13635, PTS sugar transporter subunit IIA a Information is based on position in the reference genome of CFSAN023463 (GenBank accession no. NZ_CP012021.1 ). b Syn,...”
- Transcriptomic and Phenotypic Analyses of the Sigma B-Dependent Characteristics and the Synergism between Sigma B and Sigma L in Listeria monocytogenes EGD-e
Mattila, Microorganisms 2020 - “...L to L. monocytogenes response to antimicrobial substancenisinand to transcription of putative bacteriocin immunity gene lmo2570 . The gene lmo2570 was found to be regulated by B but not by L . In line with these observations, our studies found that the gene lmo2570 was downregulated...”
- Transcriptional and phenotypic responses of Listeria monocytogenes to chlorine dioxide
Pleitner, Applied and environmental microbiology 2014 - “...lmo1921 lmo2054 lmo2191 lmo2213 lmo2387 lmo2391 lmo2392 lmo2393 lmo2570 lmo2572 lmo2585 lmo2603 lmo2646 lmo2692 lmo2705 ctaB atpC ctsR spxA Protein fate lmo0764...”
- Acid shock of Listeria monocytogenes at low environmental temperatures induces prfA, epithelial cell invasion, and lethality towards Caenorhabditis elegans
Neuhaus, BMC genomics 2013 - “...[ 56 ] 25C 1* 5.7 10.1 11.1 0.4 37C 1.8 2.5 2.4 1* 1.5 lmo2570 Integral membrane protein PrfA-regulated [ 48 ] 25C 0.7 2.5 5.8 7.6 0.8 37C 2.1 4.1 3.4 2.7 1* lmo2571 Nicotinamidase PrfA-regulated [ 48 ] 25 C 0.5 4.1 3.4...”
- Listeria monocytogenes {sigma}B has a small core regulon and a conserved role in virulence but makes differential contributions to stress tolerance across a diverse collection of strains
Oliver, Applied and environmental microbiology 2010 - “...University of California, Berkeley lmo2434 lmo2454 lmo2463 lmo2485 lmo2570 lmo2571 lmo2572 Productb B IN L. MONOCYTOGENES STRAINS OF DIFFERENT LINEAGES VOL. 76,...”
- sigma(B) and sigma(L) contribute to Listeria monocytogenes 10403S response to the antimicrobial peptides SdpC and nisin
Palmer, Foodborne pathogens and disease 2009 - “...In previous studies, the putative bacteriocin immunity gene lmo2570 was predicted to be regulated by the stress responsive alternative sigma factor, sB. As the...”
- “...some antimicrobial peptides, we hypothesized roles for lmo2570, sB, and sL in L. monocytogenes antimicrobial response. Results from phenotypic characterization...”
- Intracellular gene expression profile of Listeria monocytogenes
Chatterjee, Infection and immunity 2006 - “...SigBregulated genes lmo0794 2.68 lmo1694 lmo1786 2.40 2.88 lmo2570 lmo2673 2.47 2.24 lmo0433 lmo0434 lmo0794 lmo0994 lmo1694 lmo1786 lmo2157 lmo2230 2.84 2.06...”
- “...Internalin C SepA Similar to arsenate reductase lmo2570 protein Conserved hypothetical protein Similar to dihydroxyacetone kinase PrfA-, SigB-, and...”
- Listeria monocytogenes sigma B regulates stress response and virulence functions
Kazmierczak, Journal of bacteriology 2003 - “...microarray analyses 5726 J. BACTERIOL. lmo1698 Translation lmo2570 Hypothetical Anti-anti-sigma factor (antagonist of RsbW) Sigma B activity negative regulator...”
SDPI_BACSU / O32241 Immunity protein SdpI from Bacillus subtilis (strain 168) (see 4 papers)
TC 9.A.32.1.1 / O32241 SdpC immunity protein, SdpI (6 TMSs) (see 2 papers)
BSU33780 integral inner membrane regulator of autophagy from Bacillus subtilis subsp. subtilis str. 168
Aligns to 9:56 / 207 (23.2%), covers 100.0% of PF07853, 40.9 bits
- function: Immunity protein that provides protection for the cell against the toxic effects of SDP, its own SdpC-derived killing factor, and that functions as a receptor/signal transduction protein as well. Once SDP accumulates in the extracellular milieu, SdpI binds to SDP, causing sequestration of SdpR at the bacterial membrane.
disruption phenotype: Results in increased SigW expression which is dependent on SdpC. Results in weaker growth (70% of wild-type cell density) on LB medium, with more pronounced effects on sporulation medium (15% of wild-type). Concomitant deletion of SigW results in greatly diminished growth (5% of wild-type on LB and 3% on sporulation medium). Over time, single SdpI mutant stops growing on sporulation medium, while the SdpI SigW double mutant eventually lyses. Deletion of RsiW restores growth of the SdpI single mutant to near wild-type levels. - substrates: SdpC
- Secondary structural entropy in RNA switch (Riboswitch) identification
Manzourolajdad, BMC bioinformatics 2015 - “...-40.11 - 0.2800 124.3939972 - 0.3750 99 cspB BSU09100 0.8457109332 200 nt 3464551 3464750 reverse BSU33780 sdpI -1784 -40.60 - 0.3100 125.1740036 - 0.4450 1399 opuBA BSU33730 0.8446103930 200 nt 3684271 3684470 reverse BSU35780 lytD -456 -43.90 - 0.3450 125.0149994 - 0.3500 3399 tagD BSU35740 0.8443253636...”
lmo0910 lmo0910 from Listeria monocytogenes EGD-e
Aligns to 148:197 / 367 (13.6%), covers 100.0% of PF07853, 40.0 bits
DIP1677 Putative membrane protein from Corynebacterium diphtheriae NCTC 13129
Aligns to 28:78 / 235 (21.7%), covers 87.8% of PF07853, 39.2 bits
Or search for genetic data about PF07853 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory