Family Search for PF07867 (DUF1654)

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PF07867 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PSPPH_2123 hypothetical protein from Pseudomonas syringae pv. phaseolicola 1448A
Aligns to 24:93 / 94 (74.5%), covers 98.6% of PF07867, 119.3 bits

• Cohabitation of two different lexA regulons in Pseudomonas putida
  Abella, Journal of bacteriology 2007
  • “...(PP_2452), in other Pseudomonas species, like P. syringae (PSPPH_2123), and even in the P. aeruginosa F116 bacteriophage (F116928). In all these cases, however,...”

PP3901, PP_3901 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 16:85 / 86 (81.4%), covers 100.0% of PF07867, 111.4 bits

• Genome-Wide Analysis of Targets for Post-Transcriptional Regulation by Rsm Proteins in Pseudomonas putida
  Huertas-Rosales, Frontiers in molecular biosciences 2021
  • “...hydrolase family (EPS turnover?) PP_3580 Hypothetical protein PP_3662 Hypothetical protein Nucleotide 5-monophosphate nucleosidase YgdH-like superfamily PP_3901 Hypothetical protein Predicted phage protein PP_3909 Hypothetical protein PP_3963 Hypothetical protein Stress-induced protein (KGG repeat) domain PP_4793 Hypothetical protein PP_5099 Hypothetical protein PP_5209 Hypothetical protein FliL-like protein PP_5232 Hypothetical protein...”
• Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response
  Svenningsen, BMC microbiology 2015
  • “...the SOS-response, we constructed a DNA damage-inducible bioreporter based on the LexA-controlled phage promoter P PP3901 . According to bioreporter analysis, this gene was expressed during extensive matric stress. Despite this DNA-damage mediated gene induction, we observed no increase in the mutation frequency as monitored by...”
  • “...( P <0.05) higher than mean values from Ctrl cultures. Matric stress induces the LexA-regulated PP3901 gene, but does not increase mutation frequency If intracellular levels of ROS exceed the cellular defense capacity, oxidative stress is encountered which may lead to DNA-damage and ultimately cell death....”
• Physiological responses of Pseudomonas putida to formaldehyde during detoxification
  Roca, Microbial biotechnology 2008
  • “...Y PP_3737 Vanillate O demethylase oxidoreductase vanB 2.40 4 Y PP_3773 Hypothetical protein 5.10 7 PP_3901 Conserved hypothetical protein 1.99 7 PP_4178 Dienelactone hydrolase family protein 2.90 4 PP_4180 Conserved hypothetical protein 3.54 7 Y PP_4725 Dihydrodipicolinate reductase dapB 2.11 4 PP_4727 DnaK protein dnaK 2.33...”
• Cohabitation of two different lexA regulons in Pseudomonas putida
  Abella, Journal of bacteriology 2007
  • “...the imuA, imuB, and dnaE2 genes, and a gene (PP_3901) from a resident P. putida prophage. Furthermore, PP_3901 is also regulated by LexA1 and is required for...”
  • “...controls only its own transcriptional unit and a gene (PP_3901) that is also regulated by LexA1. To ascertain whether the observed disparity in regulon contents...”

PP_2452 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 10:79 / 80 (87.5%), covers 100.0% of PF07867, 111.3 bits

• Cohabitation of two different lexA regulons in Pseudomonas putida
  Abella, Journal of bacteriology 2007
  • “...PP_1203 (dinP) PP_1974 (uvrB) PP_5352 (uvrD) PP_2109 (hp)d PP_2452 (hp) PP_2451 (endA) PP_4019 (topB) PP_5393 (hp) PP_2924 (hp) PP_2923 (hp) PP_1110 (cysE)...”
  • “...unit: PP_1629 and PP_1630; PP_2143 and PP_2142; PP_2452 and PP_2451; PP_2924 and PP_2923; PP_1110, PP_1111, PP_1112, and PP_1113; and PP_3116, PP_3117,...”

PA2381 hypothetical protein from Pseudomonas aeruginosa PAO1
PA14_33870 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 12:80 / 80 (86.2%), covers 95.7% of PF07867, 108.4 bits

• Traditional Chinese Medicine Tanreqing Inhibits Quorum Sensing Systems in Pseudomonas aeruginosa
  Yang, Frontiers in microbiology 2020
  • “...of ABC transporter PA2330 1.7 2.7 + Hypothetical protein PA2331 1.5 3.3 + Hypothetical protein PA2381 1 2.5 Hypothetical protein PA2459 1.4 Hypothetical protein PA2564 2.3 1.5 + Hypothetical protein PA2565 2.3 1.5 + Hypothetical protein PA2566 2.3 1.7 + Conserved hypothetical protein PA2570 lecA 3.5...”
• A eukaryotic-type signalling system of Pseudomonas aeruginosa contributes to oxidative stress resistance, intracellular survival and virulence
  Goldová, BMC genomics 2011
  • “...downregulated gene PA2384 encoding global regulator responsive to Fe 2+ [ 69 ]. The genes PA2381, PA2384, and PA2398 were less downregulated in the mutant strain, whereas genes PA2403-2404 and PA2409 which were not identified as PA2384-dependent [ 69 ] were more downregulated in the mutant...”
  • “...(Related to phage, transposon, or plasmid) 3.4 3.0 5.0 2.9 Iron metabolism related genes Pyoverdine PA2381 4.72 0.023 HP 6.9 8.4 4.7 8.7 PA2384 3.11 0.006 transcriptional regulator 7.8 10.8 6.2 10.5 PA2403 -2.96 0.032 HP (Membrane proteins) 3.7 5.9 5.2 5.8 PA2404 -2.19 0.019 HP...”
• Physiology of Pseudomonas aeruginosa in biofilms as revealed by transcriptome analysis
  Folsom, BMC microbiology 2010
  • “...hypothetical protein PA1982-1983 exaAB 315 5317 alcohol dehydrogenase, cytochrome c550 PA2274 378 3473 putative monooxygenase PA2381 64 1279 O 2 conserved hypothetical protein PA2485 161 2704 hypothetical protein PA2501 133 1858 hypothetical protein PA2622 cspD 19 591 stationary phase replication inhibitor PA2754 140 1797 conserved hypothetical...”
• Uracil influences quorum sensing and biofilm formation in Pseudomonas aeruginosa and fluorouracil is an antagonist
  Ueda, Microbial biotechnology 2009
  • “...PA2069 42.2 1.1 32 Probable carbamoyl transferase PA14_35160 PA2274 13.9 1.2 13 Hypothetical protein PA14_33870 PA2381 22.6 1.1 24.3 Hypothetical protein PA14_31350 PA2566 17.1 1.5 21.1 Conserved hypothetical protein PA14_31290 PA2570 lecA 3 1.7 4.9 PAI galactophilic lectin PA14_26020 PA2939 22.6 1.1 22.6 Probable aminopeptidase PA14_24650...”
• Responses of Pseudomonas aeruginosa to low oxygen indicate that growth in the cystic fibrosis lung is by aerobic respiration
  Alvarez-Ortega, Molecular microbiology 2007
  • “...PA1789 PA1891- 1897 PA2128-2132 PA2193-2195 PA2365-2375 PA2381 PA2939 PA3049 PA3309 PA3476 PA3569-3560 PA3904-3908 PA3911-3913 PA3914-3918 PA4131-4134 PA4236...”
• Characterization of nutrient-induced dispersion in Pseudomonas aeruginosa PAO1 biofilm
  Sauer, Journal of bacteriology 2004
  • “...PA0519 PA1555 PA0518 PA3392 PA4470 PA0524 PA0511 PA4570 PA2381 PA4469 PA4471 PA2412 PA5475 PA1746 PA3572 PA2427 PA0713 PA2033 PA2034 PA2384 PA0802 PA2501 PA4067...”
• Pseudomonas aeruginosa Alters Its Transcriptome Related to Carbon Metabolism and Virulence as a Possible Survival Strategy in Blood from Trauma Patients
  Elmassry, mSystems 2019
  • “...PA14_32250 was upregulated 4.3-fold while the mRNA was upregulated by 5-fold, and the asRNA for PA14_33870 was enhanced by 2.3-fold and mRNA by 1.8-fold ( TableS3 ). In only one case did the asRNA and mRNA transcription diverge: the asRNA for leuA was upregulated by 3.6-fold...”
• Uracil influences quorum sensing and biofilm formation in Pseudomonas aeruginosa and fluorouracil is an antagonist
  Ueda, Microbial biotechnology 2009
  • “...PA14_37745 PA2069 42.2 1.1 32 Probable carbamoyl transferase PA14_35160 PA2274 13.9 1.2 13 Hypothetical protein PA14_33870 PA2381 22.6 1.1 24.3 Hypothetical protein PA14_31350 PA2566 17.1 1.5 21.1 Conserved hypothetical protein PA14_31290 PA2570 lecA 3 1.7 4.9 PAI galactophilic lectin PA14_26020 PA2939 22.6 1.1 22.6 Probable aminopeptidase...”

PP_3773 hypothetical protein from Pseudomonas putida KT2440
Aligns to 30:99 / 121 (57.9%), covers 98.6% of PF07867, 106.2 bits

• Physiological responses of Pseudomonas putida to formaldehyde during detoxification
  Roca, Microbial biotechnology 2008
  • “...MFS transporter, putative 3.51 5 Y PP_3737 Vanillate O demethylase oxidoreductase vanB 2.40 4 Y PP_3773 Hypothetical protein 5.10 7 PP_3901 Conserved hypothetical protein 1.99 7 PP_4178 Dienelactone hydrolase family protein 2.90 4 PP_4180 Conserved hypothetical protein 3.54 7 Y PP_4725 Dihydrodipicolinate reductase dapB 2.11 4...”

Pf6N2E2_159 DNA damage resistance protein from Pseudomonas fluorescens FW300-N2E2
Aligns to 12:81 / 82 (85.4%), covers 98.6% of PF07867, 104.3 bits

• mutant phenotype: PFam PF07867.7 (DUF1654). Conserved specific phenotype for cisplatin resistance, in an operon with an endonuclease, and close homologs are regulated by LexA

AO356_00980 DNA damage resistance protein from Pseudomonas fluorescens FW300-N2C3
Aligns to 29:98 / 99 (70.7%), covers 98.6% of PF07867, 103.5 bits

• mutant phenotype: PFam PF07867.7 (DUF1654). Conserved (somewhat specific) phenotype for cisplatin resistance, in operon with endonuclease, and close homologs are regulated by LexA

PSYTB_21425 DUF1654 domain-containing protein from Pseudomonas amygdali pv. tabaci str. ATCC 11528
Aligns to 12:81 / 82 (85.4%), covers 100.0% of PF07867, 94.3 bits

• N-acylhomoserine lactone-regulation of genes mediating motility and pathogenicity in Pseudomonas syringae pathovar tabaci 11528
  Cheng, MicrobiologyOpen 2017
  • “...3.41 PSYTB_21410 Type VI secretion system protein 2.01 PSYTB_21420 Type VI secretion system effector 2.38 PSYTB_21425 Type VI secretion protein 2.47 PSYTB_23396 Type II secretion system protein 2.08 PSYTB_27882 Type III effector 2.07 Twocomponent system PSYTB_04915 Twocomponent system response regulator 2.96 PSYTB_05410 Twocomponent system sensor histidine...”

Achr_20180 DUF1654 domain-containing protein from Azotobacter chroococcum NCIMB 8003
Aligns to 16:85 / 105 (66.7%), covers 98.6% of PF07867, 84.4 bits

• Azotobacter Genomes: The Genome of Azotobacter chroococcum NCIMB 8003 (ATCC 4412)
  Robson, PloS one 2015
  • “...likely to be prophages. In Ac-8003 the cluster spans 33.4 Kb and contains ~32 genes (Achr_20180 to 20550) and in Av-DJ the cluster spans 35.5 Kb and contains 29 genes (Avin_37640 to 37120). There is no significant nucleotide sequence identity between these two putative prophages though...”

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