PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF08349 (DUF1722)

PF08349 hits 27 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

VCA0055 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 197:313 / 322 (36.3%), covers 100.0% of PF08349, 150.9 bits

N1078_12140 2-thiouracil desulfurase family protein from Pseudomonas sp. MIL19
Aligns to 196:312 / 321 (36.4%), covers 100.0% of PF08349, 150.4 bits

NOC_RS02200 DUF523 and DUF1722 domain-containing protein from Nitrosococcus oceani ATCC 19707
Aligns to 207:323 / 332 (35.2%), covers 100.0% of PF08349, 150.2 bits

SO3386, SO_3386 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 194:308 / 317 (36.3%), covers 100.0% of PF08349, 148.5 bits

ESA_02639 hypothetical protein from Enterobacter sakazakii ATCC BAA-894
Aligns to 191:308 / 317 (37.2%), covers 100.0% of PF08349, 147.0 bits

VV2_1541 Conserved hypothetical protein from Vibrio vulnificus CMCP6
Aligns to 192:308 / 317 (36.9%), covers 100.0% of PF08349, 145.0 bits

PP0741, PP_0741 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 196:313 / 322 (36.6%), covers 100.0% of PF08349, 144.4 bits

VFMJ11_A0875 hypothetical protein from Vibrio fischeri MJ11
VFMJ11_A0875 DUF523 and DUF1722 domain-containing protein from Aliivibrio fischeri MJ11
Aligns to 189:305 / 314 (37.3%), covers 100.0% of PF08349, 142.6 bits

JQF37_16640 DUF523 and DUF1722 domain-containing protein from Pseudomonas sp. MIL9
Aligns to 194:310 / 319 (36.7%), covers 100.0% of PF08349, 142.3 bits

PA14_61610 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 194:310 / 319 (36.7%), covers 100.0% of PF08349, 140.6 bits

PA4658 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 193:309 / 318 (36.8%), covers 100.0% of PF08349, 140.4 bits

RRL13_00330 DUF523 and DUF1722 domain-containing protein from Enterobacter cloacae
Aligns to 192:309 / 319 (37.0%), covers 100.0% of PF08349, 135.7 bits

t1257 putative pathogenicity island protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 192:309 / 319 (37.0%), covers 100.0% of PF08349, 135.3 bits

STM1389 putative inner membrane protein from Salmonella typhimurium LT2
H9L4B1 Inner membrane protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Aligns to 192:309 / 319 (37.0%), covers 100.0% of PF08349, 135.3 bits

P3TCK_10668 hypothetical protein from Photobacterium profundum 3TCK
Aligns to 189:305 / 314 (37.3%), covers 100.0% of PF08349, 133.2 bits

YPK_1162 hypothetical protein from Yersinia pseudotuberculosis YPIII
Aligns to 41:157 / 160 (73.1%), covers 99.1% of PF08349, 123.3 bits

Tkp / b0707 DUF1722 domain-containing protein YbgA from Escherichia coli K-12 substr. MG1655 (see paper)
b0707 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 41:158 / 169 (69.8%), covers 100.0% of PF08349, 119.9 bits

ECs0732 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 41:158 / 169 (69.8%), covers 100.0% of PF08349, 117.5 bits

TTHB112 hypothetical protein from Thermus thermophilus HB8
Aligns to 190:306 / 315 (37.1%), covers 100.0% of PF08349, 116.7 bits

MW2300 hypothetical protein from Staphylococcus aureus subsp. aureus MW2
Aligns to 15:124 / 127 (86.6%), covers 97.4% of PF08349, 83.1 bits

SAPIG2433 YbgA family protein from Staphylococcus aureus subsp. aureus ST398
Aligns to 15:124 / 127 (86.6%), covers 97.4% of PF08349, 82.2 bits

SA2168 hypothetical protein from Staphylococcus aureus subsp. aureus N315
Aligns to 15:124 / 127 (86.6%), covers 97.4% of PF08349, 81.9 bits

DA471_RS04800 YbgA family protein from Staphylococcus aureus
Aligns to 15:124 / 127 (86.6%), covers 97.4% of PF08349, 81.9 bits

SACOL2377 hypothetical protein from Staphylococcus aureus subsp. aureus COL
Aligns to 15:124 / 127 (86.6%), covers 97.4% of PF08349, 79.6 bits

SAOUHSC_02663 hypothetical protein from Staphylococcus aureus subsp. aureus NCTC 8325
Aligns to 81:190 / 193 (57.0%), covers 97.4% of PF08349, 74.7 bits

SPy0771 hypothetical protein from Streptococcus pyogenes M1 GAS
Aligns to 17:128 / 128 (87.5%), covers 94.9% of PF08349, 71.0 bits

SAV2378 probable type II DNA modification enzyme from Staphylococcus aureus subsp. aureus Mu50
Aligns to 15:106 / 112 (82.1%), covers 81.2% of PF08349, 61.8 bits

Or search for genetic data about PF08349 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory