Family Search for PF08349 (DUF1722)
Running HMMer for PF08349
PF08349 hits 27 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
VCA0055 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 197:313 / 322 (36.3%), covers 100.0% of PF08349, 150.9 bits
- MerR and ChrR mediate blue light induced photo-oxidative stress response at the transcriptional level in Vibrio cholerae
Tardu, Scientific reports 2017 - “...DEGs (VC0837, VC0943, VC1118, VC1248, VC1263, VC1359, VC1392, VC1484, VC1570, VC1643, VC1814, VC1922, VC2088, VC2301, VCA0055, VCA0615, VCA0782, VCA0798, VCA0809, VCA0957, VCA1087), designated as Set2 DEGs, were selected to validate the RNA-seq results. Among the selected DEGs, 12 were from 12 different operons while nine were...”
- “...genes (VC0837, VC0943, VC1118, VC1248, VC1263, VC1359, VC1392, VC1484, VC1570, VC1643, VC1814, VC1922, VC2088, VC2301, VCA0055, VCA0615, VCA0782, VCA0798, VCA0809, VCA0957, VCA1087) were selected for validation by qRT-PCR. Total RNA was extracted using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturers instructions. After DNase...”
- Integration of cyclic di-GMP and quorum sensing in the control of vpsT and aphA in Vibrio cholerae
Srivastava, Journal of bacteriology 2011 - “...4:H4 VC2610 VC2108 5:A6 6:C9 9:C11 VC1899 VC1673 VCA0055 Hypothetical AphA, a central regulator of virulence gene expression and quorum sensing Hypothetical...”
N1078_12140 2-thiouracil desulfurase family protein from Pseudomonas sp. MIL19
Aligns to 196:312 / 321 (36.4%), covers 100.0% of PF08349, 150.4 bits
- RudS: bacterial desulfidase responsible for tRNA 4-thiouridine de-modification
Jamontas, Nucleic acids research 2024 - “...TudS-DUF1722 Pseudomonas sp. MIL9 JAFEHE010000014 JQF37_16640 Cys15, Cys47, Cys112 RudS_PP TudS-DUF1722 Pseudomonas sp. MIL19 JAPPVG010000016 N1078_12140 Cys18, Cys50, Cys115 RudS_vir TudS- DUF1722 Escherichia phage 1H12 NC_049947 H3V29_gp66 Cys12, Cys44, Cys110 TudS TudS Uncultured bacterium 6Z92_A ( 39 , 40 , 58 ) Cys10, Cys43, Cys104 YbgA...”
NOC_RS02200 DUF523 and DUF1722 domain-containing protein from Nitrosococcus oceani ATCC 19707
Aligns to 207:323 / 332 (35.2%), covers 100.0% of PF08349, 150.2 bits
SO3386, SO_3386 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 194:308 / 317 (36.3%), covers 100.0% of PF08349, 148.5 bits
- An extracytoplasmic function sigma factor-dependent periplasmic glutathione peroxidase is involved in oxidative stress response of Shewanella oneidensis
Dai, BMC microbiology 2015 - “...Lon Lon domain protease SO_3349 TGATCC CTATCGTAGCAAGTTA CGTAAT pgpD Periplasmic glutathione peroxidase hemH2 (SO_3348, ferrochelatase) SO_3386 TGATCC TTGTACAAGAATGGTC CGTAAT ybgA Photoreactivation-associated inner membrane protein phrB (SO_3384, deoxyribo-dipyrimidine photolyase) cfa (SO_3379, cyclopropane fatty acid synthase) SO_4169 TGATCC TCACAGTGCTGCTATC CGTAAC phr Deoxyribodipyrimidine photolyase-related protein SO_4170 (CsgA short chain...”
- “...cfa ) and SO_3384 ( phrB ) obviously belong to the same operon ranging from SO_3386 to SO_3374. By promoter recognition, we were also able to identify other candidates of RpoE2 regulon, including SO_3348 (encoding a ferrochelatase paralogue HemH2 homologous to HemH involved in heme biosynthesis),...”
- Global transcriptome analysis of the heat shock response of Shewanella oneidensis
Gao, Journal of bacteriology 2004 - “...sigma54-dependent transcription (www.tigr.org). Two genes (SO1094 and SO3386) displayed the highest induction through the whole period of heat shock. The SO1094...”
- “...transcription past template-encoded arresting sites, whereas the SO3386 protein belongs to a family of uncharacterized bacterial proteins. Interestingly, SO1264...”
ESA_02639 hypothetical protein from Enterobacter sakazakii ATCC BAA-894
Aligns to 191:308 / 317 (37.2%), covers 100.0% of PF08349, 147.0 bits
VV2_1541 Conserved hypothetical protein from Vibrio vulnificus CMCP6
Aligns to 192:308 / 317 (36.9%), covers 100.0% of PF08349, 145.0 bits
- A consensus sequence for binding of SmcR, a Vibrio vulnificus LuxR homologue, and genome-wide identification of the SmcR regulon
Lee, The Journal of biological chemistry 2008 - “...VV1_1702, VV2_0057 VV2_0058, VV2_0279, VV2_0517, VV2_1111, VV2_1541 VV2_1542 VV2_1543 VV2_1544 VV1_0300, VV1_0840 VV1_0839 VV1_0838 VV1_0837, VV1_1085, VV1_1456...”
- “...VV1_1471 VV2_0057 VV2_0058 VV2_0279 VV2_0517 VV2_1111 VV2_1541 VV2_1542 VV2_1543 VV2_1544 Hypothetical protein Predicted membrane protein Hypothetical protein...”
PP0741, PP_0741 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 196:313 / 322 (36.6%), covers 100.0% of PF08349, 144.4 bits
- RudS: bacterial desulfidase responsible for tRNA 4-thiouridine de-modification
Jamontas, Nucleic acids research 2024 - “...ID ( 87 ) Gene locus tag Conserved cysteines RudS_KT TudS-DUF1722 Pseudomonas putida KT2440 AE015451 PP_0741 Cys17, Cys49, Cys114 RudS_TT TudS-DUF1722 Thermus thermophilus HB8 AP008227 TTHB112 Cys16, Cys47, Cys111 RudS_ST a (ORF319) TudS-DUF1722 S almonella enterica subsp. enterica LT2 AE006468 STM1389 Cys12, Cys44, Cys110 RudS_PU TudS-DUF1722...”
- “...gene locus ID: PP_5158 ) and a TudS-DUF1722 fusion protein RudS (GenBank gene locus ID: PP_0741 ). Gene knockout studies in P. putida KT2440 suggested that contrary to stand-alone TudS (PP_5158) the RudS (PP_0741) gene product does not participate in exogenous 4-thiouracil/4-thiouridine utilization ( 40 ),...”
- UEG Week 2024 Poster Presentations
, United European gastroenterology journal 2024 - UEG Week 2023 Poster Presentations
, United European gastroenterology journal 2023 - Light Response of Pseudomonas putida KT2440 Mediated by Class II LitR, a Photosensor Homolog
Sumi, Journal of bacteriology 2020 (secret) - Mechanisms of resistance to chloramphenicol in Pseudomonas putida KT2440
Fernández, Antimicrobial agents and chemotherapy 2012 - “...PP0339 PP0368 PP0504 PP0529 PP0586 PP0588 PP0613 PP0620 PP0741 PP0742 PP0765 PP0766 PP0951 PP1018 PP1514 PP1516 PP2284 PP2310 PP2512 PP2736 PP2738 PP3352 PP3440...”
VFMJ11_A0875 hypothetical protein from Vibrio fischeri MJ11
VFMJ11_A0875 DUF523 and DUF1722 domain-containing protein from Aliivibrio fischeri MJ11
Aligns to 189:305 / 314 (37.3%), covers 100.0% of PF08349, 142.6 bits
JQF37_16640 DUF523 and DUF1722 domain-containing protein from Pseudomonas sp. MIL9
Aligns to 194:310 / 319 (36.7%), covers 100.0% of PF08349, 142.3 bits
- RudS: bacterial desulfidase responsible for tRNA 4-thiouridine de-modification
Jamontas, Nucleic acids research 2024 - “...enterica subsp. enterica LT2 AE006468 STM1389 Cys12, Cys44, Cys110 RudS_PU TudS-DUF1722 Pseudomonas sp. MIL9 JAFEHE010000014 JQF37_16640 Cys15, Cys47, Cys112 RudS_PP TudS-DUF1722 Pseudomonas sp. MIL19 JAPPVG010000016 N1078_12140 Cys18, Cys50, Cys115 RudS_vir TudS- DUF1722 Escherichia phage 1H12 NC_049947 H3V29_gp66 Cys12, Cys44, Cys110 TudS TudS Uncultured bacterium 6Z92_A (...”
PA14_61610 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 194:310 / 319 (36.7%), covers 100.0% of PF08349, 140.6 bits
PA4658 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 193:309 / 318 (36.8%), covers 100.0% of PF08349, 140.4 bits
- Complex ciprofloxacin resistome revealed by screening a Pseudomonas aeruginosa mutant library for altered susceptibility
Breidenstein, Antimicrobial agents and chemotherapy 2008 - “...by University of California, Berkeley PA4225 PA4400 PA4600 PA4658 PA4687 PA4688 PA4734 PA4946 PA5028 PA5131 PA5250 PA5334 PA5427 PA5551 PA5560 PA5562 PA5565...”
- Construction and analysis of photolyase mutants of Pseudomonas aeruginosa and Pseudomonas syringae: contribution of photoreactivation, nucleotide excision repair, and mutagenic DNA repair to cell survival and mutability following exposure to UV-B radiation
Kim, Applied and environmental microbiology 2001 - “...213 bp of noncoding sequence between genes PA4657 and PA4658 and 414 bp of noncoding sequence upstream of gene PA4657, where promoter sequences regulating the...”
- “...(GenBank accession no.) phr PA4659 PA4658 5,227,887-5,229,332 5,226,991-5,227,890 5,226,025-5,226,981 PA4657 5,224,889-5,225,872 Photolyase from E. coli...”
RRL13_00330 DUF523 and DUF1722 domain-containing protein from Enterobacter cloacae
Aligns to 192:309 / 319 (37.0%), covers 100.0% of PF08349, 135.7 bits
- RudS: bacterial desulfidase responsible for tRNA 4-thiouridine de-modification
Jamontas, Nucleic acids research 2024 - “...the genome sequence of E. cloacae (GenBank: CP135498.1 ), the RudS encoding gene (locus tag: RRL13_00330) is in the immediate vicinity to the MerR family transcriptional regulator (locus tag: RRL13_00340), suggesting a light-inducible RudS gene expression, which might explain the observed effect. Furthermore, a previous study...”
STM1389 putative inner membrane protein from Salmonella typhimurium LT2
H9L4B1 Inner membrane protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Aligns to 192:309 / 319 (37.0%), covers 100.0% of PF08349, 135.3 bits
- RudS: bacterial desulfidase responsible for tRNA 4-thiouridine de-modification
Jamontas, Nucleic acids research 2024 - “...TTHB112 Cys16, Cys47, Cys111 RudS_ST a (ORF319) TudS-DUF1722 S almonella enterica subsp. enterica LT2 AE006468 STM1389 Cys12, Cys44, Cys110 RudS_PU TudS-DUF1722 Pseudomonas sp. MIL9 JAFEHE010000014 JQF37_16640 Cys15, Cys47, Cys112 RudS_PP TudS-DUF1722 Pseudomonas sp. MIL19 JAPPVG010000016 N1078_12140 Cys18, Cys50, Cys115 RudS_vir TudS- DUF1722 Escherichia phage 1H12 NC_049947...”
- Balance between extracellular matrix production and macrophage survival by aSalmonella-specific SPI-2 encoded transcription factor
Echarren, 2021 - Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands
Medvedev, Scientific reports 2024 - “...S2 ) and their function is often unclear. For example, the Inner membrane protein (UniProt: H9L4B1, gene: orf319), which is located within SPI-2 27 , has no GO assignment and its function is vague. The N-terminal domain of H9L4B1 adopts a Flavodoxin-like structure that belongs to...”
- “...a [4Fe-4S] cluster bound by three cysteines colored in magenta (Fig. 4 B) 37 . H9L4B1 contains three cysteines at the same positions as TudS and one additional cysteine at the C-terminal part of the third beta strand (Fig. 4 A). This suggests that H9L4B1 is...”
t1257 putative pathogenicity island protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 192:309 / 319 (37.0%), covers 100.0% of PF08349, 135.3 bits
- The European Union Summary Report on Antimicrobial Resistance in zoonotic and indicator bacteria from humans, animals and food in 2020/2021
European, EFSA journal. European Food Safety Authority 2023 - “...(1), untypable (1). In 2018, spatypes: t011 CC398 (8 isolates), t034 CC398 (1), t223 (3), t1257 (1). The t223 isolates were PVLnegative; TSST status was not determined. The PVL status of the t1257 isolate was not reported. In 2021, spatypes: t037 (3), t011 (10), t034 (2)....”
- The European Union Summary Report on Antimicrobial Resistance in zoonotic and indicator bacteria from humans, animals and food in 2018/2019
European, EFSA journal. European Food Safety Authority 2021 - “...97 (1).7: spa types: t011 CC 398 (8 isolates), t034 CC 398 (1), t223 (3), t1257 (1). The t223 isolates were PVL negative; TSST status was not determined. The PVL status of the t1257 isolate was not reported.8: spa types: t011 CC 398 (3), unspecified (168).9:...”
- “...and scn ). All six bovine t223 isolates were therefore categorised as HAMRSA. spa type t1257 was also reported from a dairy cow herd in Belgium. This spa type has been associated with sequence types within CC8 (ST239 and ST612), but appears to be more frequently...”
- The European Union Summary Report on Antimicrobial Resistance in zoonotic and indicator bacteria from humans, animals and food in 2017/2018
European, EFSA journal. European Food Safety Authority 2020 - “...(1). 3: spa types: t011 CC 398 (8 isolates), t034 CC 398 (1), t223 (3), t1257 (1). The t223 isolates were PVL negative; TSST status was not determined. The PVL status of the t1257 isolate was not reported. 4: spa types: t011 CC 398 (5 isolates),...”
- “...and scn ). All six bovine t223 isolates were therefore categorised as HAMRSA. spa type t1257 was also reported from a dairy cow herd in Belgium. This spa type has been associated with sequence types within CC8 (ST239 and ST612) but appears to be more frequently...”
- The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2017
European, EFSA journal. European Food Safety Authority 2019 - “...to high (71.4%, 57.1%, 28.6% and 28.6%, respectively). These isolates were spa types t011 and t1257. Notably, one t011 isolate was susceptible to oxacillin, with the MIC at the ECOFF. Sweden reported 10 mecC MRSA isolates, spa types t373 and t9268, from goats following onfarm clinical...”
- “...j spa types: t9268 CC130 (1 isolate), t9268 (1). k spa types: t011 (5 isolates), t1257 (2). The t1257 isolates were PVL negative. John Wiley & Sons, Ltd 7.3 Discussion The monitoring of MRSA in animals and food was voluntary in 2017 and only a limited...”
- An overview of antimicrobial resistance surveillance among healthcare-associated pathogens in South Africa
Singh-Moodley, African journal of laboratory medicine 2018 - “...the five most common spa -types accounting for 87% of the isolates and were t037, t1257, t045, t064 and t012. The most common multilocus sequence type (MLST) was ST612 clonal complex 8 (CC8) ( n = 7), followed by ST5 (CC5) ( n = 4), ST36...”
- Posters
, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2007 - “...2 1 1840 1 0.45 t1504 1 0.45 spa-CC 064; Archaic/Iberian clonality 1064 44 20 t1257 20 9 t951 3 1 t1443 3 1 t104 1 0.45 t1256 1 0.45 t1555 1 0.45 t1774 1 0.45 t1779 1 0.45 spa-CC 045; NY/Japan clonality t04514 6 t0013...”
P3TCK_10668 hypothetical protein from Photobacterium profundum 3TCK
Aligns to 189:305 / 314 (37.3%), covers 100.0% of PF08349, 133.2 bits
- Ecotype diversity and conversion in Photobacterium profundum strains
Lauro, PloS one 2014 - “...profundum 3TCK sequencing library containing P3TCK_10673 ( rpoX ; RNA polymerase sigma factor, ECF subfamily), P3TCK_10668 (Conserved Hypothetical Protein), P3TCK_10663 ( phr ; deoxyribodipyrimidine photolyase) was cut with Xho I+ Kpn I. The 7.2 kbp band contained the genes of interest and was gel purified and...”
- “...obtained by cutting pFL303 with Eco RI and re-ligating, which effectively eliminates P3TCK_10673, most of P3TCK_10668 and the region with the two divergent promoters between the two. This deletion construct was named pFL304. The promoter region was PCR amplified from pFL303 using primers PROMPHO2F (5 GTCGAATTCCTTTTCTTGCAGCGTCAGT...”
YPK_1162 hypothetical protein from Yersinia pseudotuberculosis YPIII
Aligns to 41:157 / 160 (73.1%), covers 99.1% of PF08349, 123.3 bits
- Functional versatility of Zur in metal homeostasis, motility, biofilm formation, and stress resistance in Yersinia pseudotuberculosis
Gu, Microbiology spectrum 2024 - “...of metal ion transport, various nutrient transport systems, including the xylose (YPK_00570059), ribose (YPK_1161 and YPK_1162), erythritol (YPK_19611963), maltose (YPK_0378 and YPK_0382), simple sugar (YPK_24082411), glutamate/aspartate (YPK_3010), oligopeptide (YPK_2067 and YPK_2068), and nucleoside (YPK_1438 and YPK_3628) transport systems were upregulated by Zur. This suggests Zurs role...”
Tkp / b0707 DUF1722 domain-containing protein YbgA from Escherichia coli K-12 substr. MG1655 (see paper)
b0707 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 41:158 / 169 (69.8%), covers 100.0% of PF08349, 119.9 bits
- RudS: bacterial desulfidase responsible for tRNA 4-thiouridine de-modification
Jamontas, Nucleic acids research 2024 - “...39 , 40 , 58 ) Cys10, Cys43, Cys104 YbgA DUF1722 Escherichia coli DH5 NZ_SGJA00000000 b0707 a The RudS protein from Salmonella enterica (RudS_ST here) was previously referred to as ORF319 in the literature ( 88 ). The conserved cysteine residues are predicted to form the...”
- Reconfiguring the quorum-sensing regulator SdiA of Escherichia coli to control biofilm formation via indole and N-acylhomoserine lactones
Lee, Applied and environmental microbiology 2009 - “...TABLE 3--Continued Functional group and/or gene b0486 b0545 b0707 b0753 b0773 b0824 b0865 b0897 b1188 b1205 b1256 b1269 b1375 b1376 b1406 b1423 b1440 b1441...”
- Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
Weber, Journal of bacteriology 2005 - “...b2266 b1990 b3361 b1051 b4107 b0389 b0419 b0581 b0643 b0707 b0753 b0767 b0865 b1003 b1050 b1188 b1164 b1258 b1259 b1341 b1547 b1614 b1783 b1784 b1847 b1999...”
- SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences
Lacour, Journal of bacteriology 2004 - “...protein (b0329) Hypothetical (inner membrane) protein (b0707) Putative enzyme (b0865) Hypothetical protein, biofilm dependent (b1481) Hypothetical protein...”
- Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
Smulski, Journal of bacteriology 2001 - “...b0458 b0485 b0572 b0573 b0581 b0600 b0607 b0643 b0662 b0707 b0753 b0786 b0789 b0790 b0800 b0806 b0836 b0865 b0897 b0964 b0966 b1003 b1045 b1050 b1060 b1103...”
- Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate
Pomposiello, Journal of bacteriology 2001 - “...TABLE 2--Continued Gene type Gene Ratio Description b0958 b1004 b0707 b0719 b0850 b1003 b1198 b2597 b2946 b3160 b3516 b3555 b4367 b4378 b3098 sulA wrbA ybgA...”
ECs0732 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 41:158 / 169 (69.8%), covers 100.0% of PF08349, 117.5 bits
TTHB112 hypothetical protein from Thermus thermophilus HB8
Aligns to 190:306 / 315 (37.1%), covers 100.0% of PF08349, 116.7 bits
- RudS: bacterial desulfidase responsible for tRNA 4-thiouridine de-modification
Jamontas, Nucleic acids research 2024 - “...TudS-DUF1722 Pseudomonas putida KT2440 AE015451 PP_0741 Cys17, Cys49, Cys114 RudS_TT TudS-DUF1722 Thermus thermophilus HB8 AP008227 TTHB112 Cys16, Cys47, Cys111 RudS_ST a (ORF319) TudS-DUF1722 S almonella enterica subsp. enterica LT2 AE006468 STM1389 Cys12, Cys44, Cys110 RudS_PU TudS-DUF1722 Pseudomonas sp. MIL9 JAFEHE010000014 JQF37_16640 Cys15, Cys47, Cys112 RudS_PP TudS-DUF1722...”
MW2300 hypothetical protein from Staphylococcus aureus subsp. aureus MW2
Aligns to 15:124 / 127 (86.6%), covers 97.4% of PF08349, 83.1 bits
SAPIG2433 YbgA family protein from Staphylococcus aureus subsp. aureus ST398
Aligns to 15:124 / 127 (86.6%), covers 97.4% of PF08349, 82.2 bits
DA471_RS04800 YbgA family protein from Staphylococcus aureus
Aligns to 15:124 / 127 (86.6%), covers 97.4% of PF08349, 81.9 bits
SA2168 hypothetical protein from Staphylococcus aureus subsp. aureus N315
Aligns to 15:124 / 127 (86.6%), covers 97.4% of PF08349, 81.9 bits
- Characterization of RNA Helicase CshA and Its Role in Protecting mRNAs and Small RNAs of Staphylococcus aureus Strain Newman
Kim, Infection and immunity 2016 - “...tnp tnp, sa1885 glmM, fmtB sa2094, saS083 sa2169, sa2168 sa0348, sa0347 saS014, ndhF sa0434, sa0435 sa0468, ftsH sa0574, sarA sa0574, sarA saS023, sa0769...”
SACOL2377 hypothetical protein from Staphylococcus aureus subsp. aureus COL
Aligns to 15:124 / 127 (86.6%), covers 97.4% of PF08349, 79.6 bits
SAOUHSC_02663 hypothetical protein from Staphylococcus aureus subsp. aureus NCTC 8325
Aligns to 81:190 / 193 (57.0%), covers 97.4% of PF08349, 74.7 bits
- RNAIII is linked with the pentose phosphate pathway through the activation of RpiRc in Staphylococcus aureus
Hallier, mSphere 2024 - “...graF Glycopeptide resistance-associated gene F 443.75 1.0139E-07 SAOUHSC_02589 rpiRc Phosphosugar-binding transcriptional regulator, RpiRc 112.98 0.00011283 SAOUHSC_02663 _ Uncharacterized protein 59.05 0.00011283 SAOUHSC_01174 _ Uncharacterized protein 57.05 6.5725E-05 SAOUHSC_01462 gpsB Cell division protein 39.78 2.1157E-05 SAOUHSC_01730 csbD Controlled by SigmaB (uncharacterized protein) 37.27 2.8383E-05 SAOUHSC_02850 cidB Holin-like...”
- Functional Mapping of Phenotypic Plasticity of Staphylococcus aureus Under Vancomycin Pressure
Yang, Frontiers in microbiology 2021 - “...SAOUHSC_02036 Phage structural protein 0 and 4 g/mL 2,446,641 38.11067526 I < - > I SAOUHSC_02663 Hypothetical protein 0 and 4 g/mL 2,644,158 35.68225792 F < - > F SAOUHSC_02871 Acetyltransferase 0 and 6 g/mL 31,826 51.06541714 G < - > G SAOUHSC_00025 GRAM_POS_ANCHORING domain-containing protein...”
- Assessment of Bona Fide sRNAs in Staphylococcus aureus
Liu, Frontiers in microbiology 2018 - “...srn_4470, SAOUHSCs084, S1036 2446923 2448156 + 1252 pb; high constitutive transcription; terminator read-through antisense of SAOUHSC_02663 RsaX20 Teg128 + Teg130, srn_4520, SAOUHSCs100 (included), SAOUHSC_02702 + S1052 2484471 2484732 + + Contains putative ORF SAOUHSC_02702 Sau-19 Teg131, RsaX21, sRNA382, srn_4680, SAOUHSCs060 2556335 2556412 + NB d Not...”
SPy0771 hypothetical protein from Streptococcus pyogenes M1 GAS
Aligns to 17:128 / 128 (87.5%), covers 94.9% of PF08349, 71.0 bits
SAV2378 probable type II DNA modification enzyme from Staphylococcus aureus subsp. aureus Mu50
Aligns to 15:106 / 112 (82.1%), covers 81.2% of PF08349, 61.8 bits
Or search for genetic data about PF08349 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory