Family Search for PF08594 (UPF0300)
PF08594.10 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
MU132_SCHPO / O13699 Meiotically up-regulated gene 132 protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see 2 papers)
SPAC11G7.06c S. pombe specific UPF0300 family protein 3 (RefSeq) from Schizosaccharomyces pombe
mug132 uncharacterized protein from Schizosaccharomyces pombe
Aligns to 152:363 / 430 (49.3%), covers 99.5% of PF08594, 275.3 bits
- function: Has a role in meiosis.
- A meiotic gene regulatory cascade driven by alternative fates for newly synthesized transcripts
Cremona, Molecular biology of the cell 2011 (no snippet) - Comprehensive isolation of meiosis-specific genes identifies novel proteins and unusual non-coding transcripts in Schizosaccharomyces pombe
Watanabe, Nucleic acids research 2001 - “...NLS motif, and five kinds of Meu27-like proteins (SPAC11G7.06c, SPAC4G9.07, SPAC10F6.15, SPCC737.04 and SPBC1861.06c.) are found in the S.pombe genome. It is...”
- A genome-wide screening of potential target genes to enhance the antifungal activity of micafungin in Schizosaccharomyces pombe
Zhou, PloS one 2013 - “..., rps31 , alp14 , aim45 , mug42 , mae2 , irc6 , pdp1 , mug132 , dad1 , clp1 , SPAC13C5.04 , sol1 , pct1 , met11 , SPBC651.04 , ldh1 , SPCC1020.07 , ilm1 , pwp1 Osmo-irremediable micafungin sensitivity SPCC1322.03 , pvg2 , rhp6...”
- Genome-wide screening for genes associated with FK506 sensitivity in fission yeast
Ma, PloS one 2011 - “...moderately sensitive (++), and six mutants ( apl6 , ste20 , ubr1 , rga7 , mug132 , and uge1 ) were mildly sensitive (+). Previously, we speculated that the FK506 sensitivity of the membrane trafficking defective mutant may result as a consequence of the impaired cell...”
- “...sst2, cyb5 +++ gyp1, lsg1, ryh1, apm1, vps45, pal1, vps1302 ++ apl6, ste20, ubr1, rga7, mug132 + +++ Indicates that the cells completely failed to grow on YPDA plus micafungin plates. ++ Indicates that tiny colonies were observed to grow on YPDA plus micafungin plates. +...”
MU131_SCHPO / Q9USY0 Meiotically up-regulated gene 131 protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see 2 papers)
SPBC1861.06c S. pombe specific UPF0300 family protein 4 (RefSeq) from Schizosaccharomyces pombe
mug131 uncharacterized protein from Schizosaccharomyces pombe
Aligns to 179:389 / 433 (48.7%), covers 99.5% of PF08594, 274.3 bits
MU133_SCHPO / Q10240 Meiotically up-regulated gene 133 protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see 2 papers)
mug133 uncharacterized protein from Schizosaccharomyces pombe
SPAC4G9.07 S. pombe specific UPF0300 family protein 2 (RefSeq) from Schizosaccharomyces pombe
Aligns to 223:434 / 513 (41.3%), covers 99.5% of PF08594, 273.3 bits
- function: Has a role in meiosis.
- Conserved and Diverged Functions of the Calcineurin-Activated Prz1 Transcription Factor in Fission Yeast
Chatfield-Reed, Genetics 2016 - “...meu22 + , meu27 + , mfm2 + , mst2 + , mug108 + , mug133 + , mug136 + , mug63 + , mug8 + , ncs1 + , pmp31 + , ppk35 + , rec10 + , scd2 + , set3 + , SPAPB1A10.08...”
- “..., SPBC19C7.05 , SPBC21B10.07 Membrane (GO:0016020) 2.18e 6 gda1 + , sen54 + , SPAC977.02, mug133 + , ima1 + , pet2 + , SPBC21B10.07 , git3 + , SPBC1271.03c, ppk35 + , ncs1 + , pun1 + , SPAC23C11.06c , SPCPB1C11.02 , gas2 + ,...”
- The fission yeast GATA factor, Gaf1, modulates sexual development via direct down-regulation of ste11+ expression in response to nitrogen starvation
Kim, PloS one 2012 - “...mug8 + , mug14 + , mug24 + , mug55 + , mug112 + , mug133 + , rec24 + , bqt2 + , and moa1 + [39] ; genes encoding permeases (5 genes) and transporters (15 genes) for amino acids, sugars, urea, and other nutrients;...”
- Comprehensive isolation of meiosis-specific genes identifies novel proteins and unusual non-coding transcripts in Schizosaccharomyces pombe
Watanabe, Nucleic acids research 2001 - “...and five kinds of Meu27-like proteins (SPAC11G7.06c, SPAC4G9.07, SPAC10F6.15, SPCC737.04 and SPBC1861.06c.) are found in the S.pombe genome. It is notable...”
MU134_SCHPO / O42654 Meiotically up-regulated gene 134 protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see 2 papers)
SPAC10F6.15 S. pombe specific UPF0300 family protein 1 (RefSeq) from Schizosaccharomyces pombe
Aligns to 148:357 / 432 (48.6%), covers 99.5% of PF08594, 272.9 bits
- function: Has a role in meiosis.
- A meiotic gene regulatory cascade driven by alternative fates for newly synthesized transcripts
Cremona, Molecular biology of the cell 2011 (no snippet) - Analysis of DNA strand-specific differential expression with high density tiling microarrays
Quintales, BMC bioinformatics 2010 - “...SPBC21C3.19 gene. C) Overexpression of non-annotated dTR100108 and dTR110092. Antisense transcription is also detected across SPAC10F6.15 under conditions of oxidative stress. D) Strong overexpression of antisense RNA (dTR300178) from a 1.5 kb region at the 5' end of the SPCC1919.05 gene. Quantitative data for all differentially...”
- The prevalence and regulation of antisense transcripts in Schizosaccharomyces pombe
Ni, PloS one 2010 - “...are noticeable exceptions of strand orientation. For instance, the majority of the reads at the SPAC10F6.15 locus were mapped to the Crick strand whereas the annotated transcript is on the Watson strand (Supplementary information file, Figure S6 ), indicating that antisense expression might be dominant for...”
- “...counts from the top strand (orange) and bottom strand (dark blue) are shown separately. For SPAC10F6.15 locus, the level of antisense transcripts is much higher than that of sense transcripts (open box). (TIF) Click here for additional data file. Figure S7 Dominant antisense expression at the...”
- Comprehensive isolation of meiosis-specific genes identifies novel proteins and unusual non-coding transcripts in Schizosaccharomyces pombe
Watanabe, Nucleic acids research 2001 - “...and five kinds of Meu27-like proteins (SPAC11G7.06c, SPAC4G9.07, SPAC10F6.15, SPCC737.04 and SPBC1861.06c.) are found in the S.pombe genome. It is notable that...”
- Taz1p and Teb1p, two telobox proteins in Schizosaccharomyces pombe, recognize different telomere-related DNA sequences
Vassetzky, Nucleic acids research 1999 - “...?/? c839 AAACAGGTTAGGGTTATAA 458/1276 SPAC10F6.14c/ SPAC10F6.15 ?/? SPAC10F6 TTCCTGGTTAGGGTTAAAG 1987 SPCC1183.11 ? SPCC1183 D, distance in...”
YJ14_SCHPO / O94245 UPF0300 protein C737.04 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPCC737.04 S. pombe specific UPF0300 family protein 6 (RefSeq) from Schizosaccharomyces pombe
Aligns to 154:368 / 421 (51.1%), covers 99.1% of PF08594, 265.8 bits
SPCC1259.14c S. pombe specific UPF0300 family protein 5 (RefSeq) from Schizosaccharomyces pombe
Aligns to 500:710 / 736 (28.7%), covers 99.1% of PF08594, 231.7 bits
- Php4 Is a Key Player for Iron Economy in Meiotic and Sporulating Cells
Brault, G3 (Bethesda, Md.) 2016 - “...pvg5 + PvGal biosynthesis protein Pvg5 2.094 2.205 665 a , 267 a , 9 SPCC1259.14c meu27 + UPF0300 family protein 5 2.054 2.557 465 a , 426 a SPBC19F8.06c meu22 + Amino acid transmembrane transporter, predicted Meu22 2.004 2.641 826 a , 724, 118 Noncoding...”
- A novel histone deacetylase complex in the control of transcription and genome stability
Zilio, Molecular and cellular biology 2014 - “...SPBC1D7.04 Multiple SPBC28F2.11 SPAPB8E5.09 SPCC1682.16 SPBC660.11 SPCC576.10c SPCC1259.14c SPBC23G7.12c SPBC106.13 5211 2942 2319 1916 1747 1628 1020 674 631...”
- A meiotic gene regulatory cascade driven by alternative fates for newly synthesized transcripts
Cremona, Molecular biology of the cell 2011 (no snippet) - Comprehensive isolation of meiosis-specific genes identifies novel proteins and unusual non-coding transcripts in Schizosaccharomyces pombe
Watanabe, Nucleic acids research 2001 - “...genome. meu27+ encodes a protein identical to SPCC1259.14c with one NLS motif, and five kinds of Meu27-like proteins (SPAC11G7.06c, SPAC4G9.07, SPAC10F6.15,...”
Or search for genetic data about PF08594 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory