PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF08719 (DUF1768)

PF08719.11 hits 16 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

AWN65_RS00880 NADAR family protein from Flavobacterium columnare
Aligns to 16:175 / 178 (89.9%), covers 99.4% of PF08719, 193.4 bits

FCOL_RS13285 NADAR family protein from Flavobacterium columnare ATCC 49512
Aligns to 16:175 / 177 (90.4%), covers 99.4% of PF08719, 191.3 bits

DR_1263 NADAR family protein from Deinococcus radiodurans R1
Aligns to 9:157 / 159 (93.7%), covers 100.0% of PF08719, 170.5 bits

DR1263 conserved hypothetical protein (NCBI ptt file) from Deinococcus radiodurans R1
Aligns to 72:220 / 222 (67.1%), covers 100.0% of PF08719, 169.1 bits

RIBX_NOSP7 / B2J4E5 N-glycosidase Npun_R5314; Riboflavin biosynthesis intermediates N-glycosidase; EC 3.2.2.- from Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (see paper)
Aligns to 4:146 / 156 (91.7%), covers 100.0% of PF08719, 140.6 bits

TTHERM_00486130 swarming motility protein ybiA from Tetrahymena thermophila SB210
Aligns to 59:200 / 204 (69.6%), covers 100.0% of PF08719, 129.4 bits

A1S_0598 hypothetical protein (RefSeq) from Acinetobacter baumannii ATCC 17978
Aligns to 1:103 / 105 (98.1%), covers 60.9% of PF08719, 127.8 bits

W8SSB7 N-glycosidase YbiA from Escherichia coli
Aligns to 7:146 / 149 (94.0%), covers 98.8% of PF08719, 126.4 bits

YbiA / b0798 N-glycosidase YbiA from Escherichia coli K-12 substr. MG1655 (see 3 papers)
RIBX_ECOLI / P30176 N-glycosidase YbiA; Riboflavin biosynthesis intermediates N-glycosidase; EC 3.2.2.- from Escherichia coli (strain K12) (see 2 papers)
ybiA / P30176 N-glycosidase YbiA from Escherichia coli (strain K12) (see 3 papers)
ybiA / ECOCYC|EG11579-MONOMER swarming motility protein ybiA from Escherichia coli K12 (see 6 papers)
b0798 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 18:157 / 160 (87.5%), covers 98.8% of PF08719, 126.1 bits

RIBXA_VIBVY / Q7MGG3 Riboflavin biosynthesis protein VVA0006; EC 3.2.2.-; EC 3.5.4.25 from Vibrio vulnificus (strain YJ016) (see paper)
Aligns to 22:161 / 367 (38.1%), covers 100.0% of PF08719, 123.3 bits

RIBRX_MAIZE / K7WIZ6 Riboflavin biosynthesis protein PYRR, chloroplastic; EC 1.1.1.193; EC 3.2.2.- from Zea mays (Maize) (see 2 papers)
Aligns to 456:610 / 623 (24.9%), covers 98.8% of PF08719, 114.7 bits

PyrR / F4JBI5 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) from Arabidopsis thaliana (see paper)
Aligns to 427:583 / 596 (26.3%), covers 98.8% of PF08719, 111.5 bits

YP_009345041 hypothetical protein from Xinzhou nematode virus 1
Aligns to 1074:1228 / 2708 (5.7%), covers 98.8% of PF08719, 82.5 bits

RIBRX_ARATH / Q9STY4 Riboflavin biosynthesis protein PYRR, chloroplastic; EC 1.1.1.193; EC 3.2.2.- from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
AT3G47390 cytidine/deoxycytidylate deaminase family protein (RefSeq) from Arabidopsis thaliana
Aligns to 434:586 / 599 (25.5%), covers 64.6% of PF08719, 75.8 bits

YP_001661452 ORF1ab replicase polyprotein pp1ab from Gill-associated virus
Aligns to 5820:5963 / 6673 (2.2%), covers 94.4% of PF08719, 46.8 bits

YP_009345038 RdRp from Xingshan nematode virus 2
Aligns to 1077:1232 / 2722 (5.7%), covers 94.4% of PF08719, 42.8 bits

Or search for genetic data about PF08719 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory