PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF08873 (DUF1834)

PF08873.11 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

DVU2714 conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough
Aligns to 5:192 / 209 (90.0%), covers 98.0% of PF08873, 232.6 bits

NMA1843 hypothetical protein (NCBI ptt file) from Neisseria meningitidis Z2491
Aligns to 1:204 / 222 (91.9%), covers 98.5% of PF08873, 171.5 bits

NMB1102 hypothetical protein (NCBI) from Neisseria meningitidis MC58
Q9JZD6 Uncharacterized protein from Neisseria meningitidis serogroup B (strain MC58)
Aligns to 1:181 / 197 (91.9%), covers 80.9% of PF08873, 140.3 bits

HI1509 hypothetical protein (NCBI) from Haemophilus influenzae Rd KW20
Aligns to 3:173 / 183 (93.4%), covers 73.0% of PF08873, 99.3 bits

P44231 Mu-like prophage FluMu protein gp37 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Aligns to 14:184 / 194 (88.1%), covers 73.0% of PF08873, 99.1 bits

ECs4977 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 1:173 / 186 (93.0%), covers 86.8% of PF08873, 63.0 bits

TRP_BPMU / Q9T1V8 Probable tail terminator protein; TrP; Gene product 37; gp37; Gene product K; gpK from Escherichia phage Mu (Bacteriophage Mu) (see 2 papers)
Aligns to 1:144 / 182 (79.1%), covers 70.6% of PF08873, 62.1 bits

BCAL1573 hypothetical protein (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 6:109 / 200 (52.0%), covers 42.6% of PF08873, 41.9 bits

Or search for genetic data about PF08873 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory