Family Search for PF08873 (DUF1834)

PF08873.11 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

DVU2714 conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough
Aligns to 5:192 / 209 (90.0%), covers 98.0% of PF08873, 232.6 bits

• Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation
  Elias, Nucleic acids research 2009
  • “...(filled square; major head subunit), DVU2712 (filled triangle; hypothetical protein), DVU2713 (open square; prophage protein), DVU2714 (open circle; prophage protein), DVU2715 (open diamond; conserved hypothetical) and DVU2716 (open triangle; tail sheath protein). ( B ) Up-regulation of a four-gene operon of DVU0192 (filled diamond; adenine specific...”

NMA1843 hypothetical protein (NCBI ptt file) from Neisseria meningitidis Z2491
Aligns to 1:204 / 222 (91.9%), covers 98.5% of PF08873, 171.5 bits

• Mu-like Prophage in serogroup B Neisseria meningitidis coding for surface-exposed antigens
  Masignani, Infection and immunity 2001
  • “...HI1508 NMA1845 NMA1844 197 gp37 HI1509 NMA1843 1118336-1118530 1118536-1119942 1120010-1120384 1120391-1120753 1121610-1121011 () 1121780-1123933 65 469 125 121...”

NMB1102 hypothetical protein (NCBI) from Neisseria meningitidis MC58
Q9JZD6 Uncharacterized protein from Neisseria meningitidis serogroup B (strain MC58)
Aligns to 1:181 / 197 (91.9%), covers 80.9% of PF08873, 140.3 bits

• Mu-like Prophage in serogroup B Neisseria meningitidis coding for surface-exposed antigens
  Masignani, Infection and immunity 2001
  • “...() 1116795-1117274 1117277-1117696 137 353 321 160 140 NMB1102 1117746-1118336 NMB1103 NMB1104 NMB1105 NMB1106 NMB1107 NMB1108 235 80 661 Not annotated C...”
• Towards New Drug Targets? Function Prediction of Putative Proteins of Neisseria meningitidis MC58 and Their Virulence Characterization
  Shahbaaz, Omics : a journal of integrative biology 2015
  • “...28. 29. 30. 31. 32. Q7DDP4 Q9JZL2 Q9JZE3 Q9JZE2 Q9JZD8 Q9JZD6 Q9JYB9 Q9JZE1 Q9JZD7 Q9JZC7 Q9JZC6 33. 34. Q9JYK2 Q9JYD6 35. Q9K0X0 36. P67259 37. 38. 39. 40. 41....”

HI1509 hypothetical protein (NCBI) from Haemophilus influenzae Rd KW20
Aligns to 3:173 / 183 (93.4%), covers 73.0% of PF08873, 99.3 bits

• Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20
  Shahbaaz, PloS one 2013
  • “...prophageFluMu major head subunit 245. HP HI1508 950376 P44230 Mu-like prophage protein GP36 246. HP HI1509 950377 P44231 Mu-like prophageFluMu protein gp37 247. HP HI1510 950834 P44232 Mu-like prophageFluMu protein gp38 248. HP HI1512 950378 P44234 Mu-like prophageFluMu tail tube protein 249 HP HI1513 950379 P44235...”
• Codon usage comparison of novel genes in clinical isolates of Haemophilus influenzae
  Gladitz, Nucleic acids research 2005
  • “...47 141 45.89 HP1 0 66.55 Conserved hypothetical protein (homol. to Mu-like phage protein gp37) HI1509 49 194 41.08 VC 6.2 69.66 H.influenzae predicted coding region HI1518 f(homol. to Mu-like phage protein gp45) HI1518 50 182 41.53 VC 2.9 74.48 H.influenzae predicted coding region HI1519 (homol....”
• Mu-like Prophage in serogroup B Neisseria meningitidis coding for surface-exposed antigens
  Masignani, Infection and immunity 2001
  • “...HI1506 HI1508 NMA1845 NMA1844 197 gp37 HI1509 NMA1843 1118336-1118530 1118536-1119942 1120010-1120384 1120391-1120753 1121610-1121011 () 1121780-1123933 65 469...”
• Molecular and biological analysis of eight genetic islands that distinguish Neisseria meningitidis from the closely related pathogen Neisseria gonorrhoeae
  Klee, Infection and immunity 2000
  • “...MuG homolog HI1568 MuI homolog HI1504 HI1505 HI1508 HI1509 Sheath protein gpL gpL (MuL) homolog HI1511 ORF15 64-kDa virion protein muN MuN homolog HI1515...”

P44231 Mu-like prophage FluMu protein gp37 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Aligns to 14:184 / 194 (88.1%), covers 73.0% of PF08873, 99.1 bits

• Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20
  Shahbaaz, PloS one 2013
  • “...head subunit 245. HP HI1508 950376 P44230 Mu-like prophage protein GP36 246. HP HI1509 950377 P44231 Mu-like prophageFluMu protein gp37 247. HP HI1510 950834 P44232 Mu-like prophageFluMu protein gp38 248. HP HI1512 950378 P44234 Mu-like prophageFluMu tail tube protein 249 HP HI1513 950379 P44235 Mu-like prophageFluMu...”
• Molecular and biological analysis of eight genetic islands that distinguish Neisseria meningitidis from the closely related pathogen Neisseria gonorrhoeae
  Klee, Infection and immunity 2000
  • “...X97918 P44225 P44226 Q01261 P45255 I64126 P44227 P44230 P44231 AB000833 P44233 AB009866 P08557 A64127 P08558 P31340 P44238 P44239 P44240 P54339 P44240 P75982...”

ECs4977 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 1:173 / 186 (93.0%), covers 86.8% of PF08873, 63.0 bits

• Gene expression induced in Escherichia coli O157:H7 upon exposure to model apple juice
  Bergholz, Applied and environmental microbiology 2009
  • “...synthesis ECs3077 ECs3398 ECs3460 ECs3503 ECs4968 ECs4969 ECs4970 ECs4977 ECs4982 ECs5147 ECs5350 rplY trmJ yfiA O157 O157 O157 O157 O157 O157 miaA slt 0.67...”
  • “...ECs1110 ECs1758 ECs3058 ECs3503 ECs3911 ECs4588 ECs4968 ECs4969 ECs4970 ECs4977 ECs4982 O157 ybaY ybiY yljA O157 O157 yeiC O157 ygiN ler O157 O157 O157 O157...”

TRP_BPMU / Q9T1V8 Probable tail terminator protein; TrP; Gene product 37; gp37; Gene product K; gpK from Escherichia phage Mu (Bacteriophage Mu) (see 2 papers)
Aligns to 1:144 / 182 (79.1%), covers 70.6% of PF08873, 62.1 bits

• function: May stop tail tube polymerization by capping the rapidly polymerizing tail tube once it has reached its requisite length and prevent its depolymerization.
  disruption phenotype: Accumulation of free heads as well as free tails longer than normal and variable in length.

BCAL1573 hypothetical protein (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 6:109 / 200 (52.0%), covers 42.6% of PF08873, 41.9 bits

• Burkholderia cenocepacia differential gene expression during host-pathogen interactions and adaptation to the host environment
  O'Grady, Frontiers in cellular and infection microbiology 2011
  • “...2.40 BCAL1533 Putative lipoprotein 2.15 BCAL1534 Putative exported protein 2.81 BCAL1535 Putative membrane protein 1.71 BCAL1573 Hypothetical phage protein 1.52 BCAL1574 Hypothetical phage protein 1.56 BCAL1577 Hypothetical phage protein 2.26 BCAL1596 Hypothetical phage protein 1.66 BCAL1597 Hypothetical phage protein 1.78 BCAL1610 Periplasmic cystine-binding protein 1.59 BCAL1640...”

Or search for genetic data about PF08873 in the Fitness Browser