Family Search for PF08965 (DUF1870)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF08965 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YdiL / b1689 DUF1870 domain-containing protein YdiL from Escherichia coli K-12 substr. MG1655
b1689 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
P76196 Uncharacterized protein YdiL from Escherichia coli (strain K12)
Aligns to 1:118 / 118 (100.0%), covers 100.0% of PF08965, 205.4 bits

• Medium-Chain-Length Fatty Acid Catabolism in Cupriavidus necator H16: Transcriptome Sequencing Reveals Differences from Long-Chain-Length Fatty Acid β-Oxidation and Involvement of Several Homologous Genes
  Strittmatter, Applied and environmental microbiology 2023 (secret)
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• Functional Prediction of Biological Profile During Eutrophication in Marine Environment
  Sbaoui, Bioinformatics and biology insights 2022
  • “...dehydrogenase/DMSO reductase YdgF P69212 Multidrug/spermidine efflux pump membrane subunit YdiJ P77748 Putative FAD-linked oxidoreductase YdiL P76196 Conserved hypothetical protein YdjX P76219 DedA family protein YehT P0AFT5 DNA-binding transcriptional dual regulator yfaL P45508 Serine protease autotransporter YfbQ , P0A959 Glutamatepyruvate aminotransferase YfdM P76509 Prophage; putative methyltransferase YfiF...”

SC1381 putative cytoplasmic protein from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
STM1362 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 2:119 / 119 (99.2%), covers 100.0% of PF08965, 203.1 bits

• Genetic mapping of genes required for motility in Caulobacter crescentus
  Ely, Genetics 1984
  • “...SC932 SC 1084 sc1091 sc 1288 SC1293 SC 1300 SC1321 SC1381 sc 1388 SC1417 SC1489 SC 1490 SC1491 SC1582 wild type ilvBlOl aux metD 104 pleAlOl leuAlO9 proA103...”
• Crystal structure of the anti-CRISPR repressor Aca2
  Usher, Journal of structural biology 2021
  • “...hits were for YdiL from Salmonella enterica subsp. enterica serovar Typhimurium LT2 (gene ydiL aka STM1362 , PDB 1S4K), and SO3848 from Shewanella oneidensis MR-1 (gene so3848 , PDB 2OX6). YdiL and SO3848 scored Z-scores of 16.6 and 11.9, respectively, and were the only hits that...”

H9C180 DUF1870 family protein from Pectobacterium phage ZF40
Aligns to 1:116 / 116 (100.0%), covers 96.6% of PF08965, 89.9 bits

• Structural basis for anti-CRISPR repression mediated by bacterial operon proteins Aca1 and Aca2
  Liu, The Journal of biological chemistry 2021
  • “...ID: L7P845 ) of P.aeruginosa phage JBD30 and the full-length Aca2 protein (1116) (Uniprot ID: H9C180 ) of P.carotovorum were synthesized by GENEWIZ and then cloned, by recombinational method, into a modified pGEX-6P-1 plasmid with an N-terminal GST-tag followed by a 3C protease cleavage site, respectively....”

7vjqA / H9C180 Pectobacterium phage zf40 apo-aca2 complexed with 26bp DNA substrate (see paper)
Aligns to 5:120 / 120 (96.7%), covers 96.6% of PF08965, 89.7 bits

• Ligand: dna (7vjqA)

WP_018223844 DUF1870 family protein from Salinispora pacifica DSM 45544
Aligns to 16:124 / 132 (82.6%), covers 81.4% of PF08965, 26.1 bits

• Isolation, characterization, and complete genome analysis of P1312, a thermostable bacteriophage that infects Thermobifida fusca
  Cheepudom, Frontiers in microbiology 2015
  • “...28419 38.9 (L) No match 044 28350 27490 32.0 (V) Transcriptional regulator (Helix-turn-helix family protein) WP_018223844 54/131 Salinispora pacifica (41) 045 28819 28406 14.5 (M) No match 046 29336 28905 16.5 (M) No match 047 30751 29333 50.3 (V) Hypothetical protein ADJ28745 88/289 Nitrosococcus watsonii C-113...”

Or search for genetic data about PF08965 in the Fitness Browser