Family Search for PF08986 (DUF1889)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF08986 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
STM0327 putative cytoplasmic protein from Salmonella typhimurium LT2
Q8ZRJ2 Cytoplasmic protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Aligns to 9:104 / 107 (89.7%), covers 100.0% of PF08986, 181.8 bits
- Salmonella serovar identification using PCR-based detection of gene presence and absence
Arrach, Journal of clinical microbiology 2008 - “...STM0059, STM0068, STM0177, STM0198, STM0287, STM0288, STM0327, STM0516, STM0610, STM0927, STM0947, STM1025, STM1029, STM1035, STM1045, STM1521, STM1534,...”
- Identification and characterization of Helicobacter pylori genes essential for gastric colonization
Kavermann, The Journal of experimental medicine 2003 - “...0753 a fliS >5 Flagellar protein STM0019 0797 a hpaA 2 Flagellar sheath adhesin hpaA STM0327 0232 a 2 Secreted protein involved in flagellar motility STM0357 0392 a cheA 2 Histidine kinase STM0007 0393 a cheV 2 Chemotaxis protein Cell envelope and outer membrane proteins STM0025...”
- Patterns in Protein Flexibility: A Comparison of NMR "Ensembles", MD Trajectories, and Crystallographic B-Factors.
Reinknecht, Molecules (Basel, Switzerland) 2021 - “...The MathWorks Inc. Natick, MA, USA 2017 Figure 1 Backbone traces of residues 4143 from Q8ZRJ2. ( A ) Crystallographic structure (PDB ID 2ES9) colored by a B-factor with blue being low, green being moderate, and red being high. Residue numbers shown in this panel reflect...”
- “...Friedmans test to compare B-factors of different atom types. Figure 4 F-scores comparing UniProt ID Q8ZRJ2 backbone heavy atom coordinate uncertainties and variances. ( A ) The first model in the NMR ensemble 2JN8, ( B ) final snapshot of the MD trajectory seeded with 2ES9...”
- Cooperativity and modularity in protein folding.
Sasai, Biophysics and physicobiology 2016 - “...[ 31 ]. Figure 12 An example of a non-sequential structure alignment. A) Structure of Q8ZRJ2 (PDB code: 2es9), B) structure of the eukaryotic clamp loader (PDB code: 1sxj), and C) the superimposition of Q8ZRJ2 and the eukaryotic clamp loader obtained by the non-sequential alignment program...”
- “...and the connectivity are ignored. D and E are two-dimensional diagrams of protein topology of Q8ZRJ2 (A) and eukaryotic clamp loader (B), respectively. F) Correspondence relation of helices obtained by MICAN. Reproduced from [ 73 ] with permission....”
- A community resource of experimental data for NMR / X-ray crystal structure pairs.
Everett, Protein science : a publication of the Protein Society 2016 - Hydrogen-exchange mass spectrometry for the study of intrinsic disorder in proteins
Balasubramaniam, Biochimica et biophysica acta 2013 - “...elegans; DUF896 family protein YnzC from Bacillus subtilis; protein YjcQ from Bacillus subtilis; cytoplasmic protein Q8ZRJ2 from Salmonella typhimurium, and Escherichia coli lipoprotein YiaD 44 . YjcQ and Q8ZRJ2 are highly structured proteins and the HXMS results obtained for them were consistent with the predominantly ordered...”
- Construct optimization for protein NMR structure analysis using amide hydrogen/deuterium exchange mass spectrometry
Sharma, Proteins 2009 - “...Bacillus subtilis (NESG target SR384); protein YjcQ from Bacillus subtilis (NESG target SR346); cytoplasmic protein Q8ZRJ2 from Salmonella typhimurium (NESG target StR65), and Escherichia coli lipoprotein YaiD (NESG target ER553). Using the first four of these proteins, we compared the DXMS-based protein disorder results with site-specific...”
- “...could not otherwise be studied. We further demonstrate that the DXMS results for YjcQ and Q8ZRJ2 are consistent with the predominantly ordered solution structures obtained for these controls. Finally, amide proton exchange rates were analyzed for four proteins individually and as a mixture, to illustrate the...”
YoaC / b1810 DUF1889 domain-containing protein YoaC from Escherichia coli K-12 substr. MG1655
b1810 predicted protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:96 / 99 (97.0%), covers 100.0% of PF08986, 161.6 bits
ECs2519 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 21:116 / 119 (80.7%), covers 100.0% of PF08986, 160.7 bits
Or search for genetic data about PF08986 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory