Family Search for PF09086 (DUF1924)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF09086 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Slit_1323 Domain of unknown function DUF1924 from Sideroxydans lithotrophicus ES-1
Aligns to 36:131 / 134 (71.6%), covers 97.9% of PF09086, 146.0 bits

• Gallionellaceae pangenomic analysis reveals insight into phylogeny, metabolic flexibility, and iron oxidation mechanisms
  Hoover, mSystems 2023
  • “...encode a cytochrome b (Slit_1321), a hypothetical extracellular protein (Slit_1322), a monoheme cytochrome class I (Slit_1323), a periplasmic diheme cytochrome (Slit_1324; Cluster 446 in Table 1 ), and a molecular chaperone Hsp33 (Slit_1325). We found homologs of the Slit_13211324 genes are common, co-located, and well-conserved among...”
  • “...were colocalized with a cytochrome b (Slit_1321), hypothetical extracellular protein (Slit_1322), monoheme cytochrome class I (Slit_1323), and molecular chaperone Hsp33 (Slit_1325). PCC3 modeling To model predicted PCC3 proteins, we used ColabFold: AlphaFold2 using MMseqs2 ( 166 ). Setting included using MSA mode MMseqs2 (UniRef+environmental), pair mode...”
• Unraveling Fe(II)-Oxidizing Mechanisms in a Facultative Fe(II) Oxidizer, Sideroxydans lithotrophicus Strain ES-1, via Culturing, Transcriptomics, and Reverse Transcription-Quantitative PCR
  Zhou, Applied and environmental microbiology 2022
  • “...for a cytochrome b (Slit_1321), a hypothetical extracellular protein (Slit_1322), a monoheme cytochrome class I (Slit_1323), a diheme cytochrome c (Slit_1324), and a heat shock protein (Slit_1325). This gene cluster also has homologs in three other neutrophilic Fe(II) oxidizers, Sideroxydans sp. strain CL21, Gallionella capsiferriformans ES-2,...”

BMULJ_05656 cytochrome c553 from Burkholderia multivorans ATCC 17616
Aligns to 24:115 / 120 (76.7%), covers 96.9% of PF09086, 129.5 bits

• Understanding the Pathogenicity of Burkholderia contaminans, an Emerging Pathogen in Cystic Fibrosis
  Nunvar, PloS one 2016
  • “...5.8 16.8 hypothetical protein WR30_RS16800 BCAM0315 BMULJ_05654 15.5 3.9 33.6 cytochrome c553 WR30_RS29415 ortholog absent BMULJ_05656 5.5 1.4 4.3 putative cytochrome b WR30_RS29420 ortholog absent BMULJ_05658 3.7 -1.4 4.2 hypothetical protein WR30_RS16555 BCAM0317 BMULJ_05663 173.6 32.9 102.5 putative cation-transporting ATPase WR30_RS16560 BCAM0318 BMULJ_05664 26.4 3.1 23.8...”

WR30_RS29415 DUF1924 domain-containing protein from Burkholderia contaminans FFH2055
Aligns to 24:115 / 120 (76.7%), covers 94.8% of PF09086, 126.8 bits

• Understanding the Pathogenicity of Burkholderia contaminans, an Emerging Pathogen in Cystic Fibrosis
  Nunvar, PloS one 2016
  • “...BCAM0314 BMULJ_05653 23.3 5.8 16.8 hypothetical protein WR30_RS16800 BCAM0315 BMULJ_05654 15.5 3.9 33.6 cytochrome c553 WR30_RS29415 ortholog absent BMULJ_05656 5.5 1.4 4.3 putative cytochrome b WR30_RS29420 ortholog absent BMULJ_05658 3.7 -1.4 4.2 hypothetical protein WR30_RS16555 BCAM0317 BMULJ_05663 173.6 32.9 102.5 putative cation-transporting ATPase WR30_RS16560 BCAM0318 BMULJ_05664...”

1dw0A / P81238 Structure of oxidized shp, an oxygen binding cytochromE C (see paper)
Aligns to 15:109 / 112 (84.8%), covers 97.9% of PF09086, 124.9 bits

• Ligand: heme c (1dw0A)

SO4484 cytochrome c-type protein Shp from Shewanella oneidensis MR-1
Aligns to 51:141 / 144 (63.2%), covers 96.9% of PF09086, 119.6 bits

• Promoting Extracellular Electron Transfer of Shewanella oneidensis MR-1 by Optimizing the Periplasmic Cytochrome c Network
  Sun, Frontiers in microbiology 2021
  • “...This study pHGEN-Ptac-SO4485 P tac - SO4485 within pHGEN-Ptac This study pHGEN-Ptac-SO4484 P tac - SO4484 within pHGEN-Ptac This study pHGEN-Ptac-SO4142 P tac - SO4142 within pHGEN-Ptac This study pHGEN-Ptac-SO4666 P tac - SO4666 within pHGEN-Ptac This study pHGEN-Ptac-SO717 P tac - SO0717 within pHGEN-Ptac This...”
• Transcriptome analysis reveals a stress response of Shewanella oneidensis deprived of background levels of ionizing radiation
  Castillo, PloS one 2018
  • “...otr Octaheme tetrathionate reductase 1.17 SO4202 tatA Twin-arginine translocation protein -1.13 SO4483 Cytochrome b 1.14 SO4484 shp Monoheme cytochrome c 1.13 SO4568 nrfD Nitrite reductase quinol dehydrogenase component 1.50 SO4591 cymA Cytochrome c-type protein -1.45 SO4607 coxA Aa3 type cytochrome c oxidase subunit I 1.03 SO4608...”
• Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants
  Bretschger, Applied and environmental microbiology 2007
  • “...SO3420 SO3920 SO3980 SO4047 SO4048 SO4142 SO4144 SO4360 SO4484 SO4485 SO4572 SO4591 SO4606 SO4666 Octaheme cytochrome c; involved with the sulfur cycle...”
• Global transcriptional profiling of Shewanella oneidensis MR-1 during Cr(VI) and U(VI) reduction
  Bencheikh-Latmani, Applied and environmental microbiology 2005
  • “...upregulated for both Cr(VI) and U(VI) reduction: SO4483, SO4484, and SO4485. Additionally, genes encoding proteins involved in the reduction of various electron...”
  • “...is associated with the previous two (10). In MR-1, SO4484 is homologous to SHP (44.9% identity, 63.3% similarity); SO4485 is homologous to DHC (44% identity,...”

1e8eA / Q9RQB9 Solution structure of methylophilus methylotrophus cytochrome c''. Insights into the structural basis of haem-ligand detachment (see paper)
Aligns to 21:116 / 124 (77.4%), covers 95.8% of PF09086, 118.0 bits

• Ligand: heme c (1e8eA)

CYCA_METME / Q9RQB9 Cytochrome c'' from Methylophilus methylotrophus (Bacterium W3A1) (see paper)
Aligns to 41:136 / 144 (66.7%), covers 95.8% of PF09086, 117.8 bits

• subunit: Monomer.

Or search for genetic data about PF09086 in the Fitness Browser