Family Search for PF09186 (DUF1949)

PF09186 hits 22 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

BC5199 Xaa-Pro dipeptidase from Bacillus cereus ATCC 14579
Aligns to 140:195 / 211 (26.5%), covers 98.2% of PF09186, 69.3 bits

• Cysteine Proteome Reveals Response to Endogenous Oxidative Stress in Bacillus cereus
  Hamitouche, International journal of molecular sciences 2021
  • “...and metabolism BC1182 Oligopeptide transport ATP-binding protein (OppD) VVIAMALAC 172 NPK 1.7 1.2 Function unknown BC5199 Xaa-Pro dipeptidase FIC 25 YISR 1.6 1.1 BC4341 GTP pyrophosphokinase ITC 88 C 89 FVEDIYHLK BC3302 Pentapeptide repeat containing protein SC 78 NLEEIHIADC 88 R 1.8 2.1 ASFFDC 68 DFEFADFR...”

P32437 IMPACT family member YvyE from Bacillus subtilis (strain 168)
BSU35510 hypothetical protein from Bacillus subtilis subsp. subtilis str. 168
Aligns to 140:195 / 217 (25.8%), covers 96.4% of PF09186, 67.2 bits

• Screening for imprinted genes by allelic message display: identification of a paternally expressed gene impact on mouse chromosome 18
  Hagiwara, Proceedings of the National Academy of Sciences of the United States of America 1997
  • “...no. P44842), B. subtilis YVYE (Swiss-Prot no. P32437), and T. aquaticus YPOL (Swiss-Prot no. P32438). Amino acid residues similarly conserved between...”
• Secondary structural entropy in RNA switch (Riboswitch) identification
  Manzourolajdad, BMC bioinformatics 2015
  • “...nt 3640353 3640552 forward BSU35210 yvkA -19956 -52.60 - 0.3600 121.8539963 - 0.4250 6302 yvyE BSU35510 0.8399478197 200 nt 3686112 3686311 forward BSU35770 tagC -1247 -51.99 - 0.3750 122.5879974 - 0.4300 2602 gerBA BSU35800 0.8393257856 200 nt 3686112 3686311 forward BSU35770 tagC -1247 -51.99 - 0.3750...”
  • “...nt 3640453 3640652 forward BSU35210 yvkA -20056 -45.52 - 0.3450 123.6029968 - 0.4400 6202 yvyE BSU35510 0.8211722970 200 nt 530787 530986 forward BSU_tRNA_51 trnS-Leu2 -1266 -47.10 - 0.3350 122.6100006 - 0.3850 902 sacV BSU04830 0.8206871748 200 nt 4139260 4139459 forward BSU40240 yycS -3397 -60.10 - 0.5050...”

CD630_07910 YigZ family protein from Clostridioides difficile 630
Aligns to 139:194 / 214 (26.2%), covers 98.2% of PF09186, 64.3 bits

• Clostridioides difficile Phosphoproteomics Shows an Expansion of Phosphorylated Proteins in Stationary Growth Phase
  Smits, mSphere 2022
  • “...throughout growth. Exponential-growth-phase phosphorylation is not observed for all cell division proteins; for instance, ZapA (CD630_07910) and FtsZ (CD630_26460) are predominantly phosphorylated in stationary growth phase ( TableS1 ). FtsZ is also phosphorylated in other bacteria ( 47 49 ). We were interested to see if...”

BH3630 hypothetical protein from Bacillus halodurans C-125
Aligns to 140:195 / 213 (26.3%), covers 98.2% of PF09186, 63.6 bits

• Computational identification of the Spo0A-phosphate regulon that is essential for the cellular differentiation and development in Gram-positive spore-forming bacteria
  Liu, Nucleic acids research 2003
  • “...yuxHII yvyEII ywcIII abrBI BH2351 (yneE ortholog)II BH3630 (yvyE ortholog)II kinCI spo0AI spo0FI spoIIEI spoIIGAI abrBI kinCI spo0AI spo0AI spo0FI spoIIEI...”

SCO1302 hypothetical protein from Streptomyces coelicolor A3(2)
Aligns to 140:195 / 208 (26.9%), covers 98.2% of PF09186, 57.6 bits

• Cloning and engineering of the cinnamycin biosynthetic gene cluster from Streptomyces cinnamoneus cinnamoneus DSM 40005
  Widdick, Proceedings of the National Academy of Sciences of the United States of America 2003
  • “...627 bp. The encoded protein is 79% identical to SCO1302 of S. coelicolor (11). CinZ shares 40% identity with PepQ, a proline dipeptidase from E. coli (GenBank...”

Z5370 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 142:197 / 205 (27.3%), covers 98.2% of PF09186, 56.0 bits

• Engineering Escherichia coli for succinate production from hemicellulose via consolidated bioprocessing
  Zheng, Microbial cell factories 2012
  • “...pB-E 3 X 7 AD was constructed and transformed into BL21 (DE3) to obtain strain Z5370, in which abf 2 (coding an -arabinofuranosidase originated from Bacillus subtilis 168 [ 38 ]), E3, X7 and dsbA genes were co-expressed. The effect of -arabinofuranosidase on the improvement of...”
  • “...and unhydrolyzed sugars during cultivation of the engineered strains . Circle, Z3000; square, Z4370; triangle, Z5370; the solid symbols indicate OD 600 and the hollow ones indicate unhydrolyzed sugars. Forty-eight hours after induction, the degree of xylan hydrolysis was improved from 66% to 79% with -arabinofuranosidase...”

YigZ / b3848 IMPACT family member YigZ from Escherichia coli K-12 substr. MG1655 (see 7 papers)
YIGZ_ECOLI / P27862 IMPACT family member YigZ from Escherichia coli (strain K12) (see paper)
yigZ / RF|NP_418290 IMPACT family member yigZ from Escherichia coli K12 (see paper)
Aligns to 141:196 / 204 (27.5%), covers 98.2% of PF09186, 54.6 bits

• subunit: Monomer.
• Screening for imprinted genes by allelic message display: identification of a paternally expressed gene impact on mouse chromosome 18
  Hagiwara, Proceedings of the National Academy of Sciences of the United States of America 1997
  • “...Resource no. S61035), E. coli YIGZ (Swiss-Prot no. P27862), H. influenzae YIGZ (Swiss-Prot no. P44842), B. subtilis YVYE (Swiss-Prot no. P32437), and T....”
• Yeast chromosome III: new gene functions
  Koonin, The EMBO journal 1994
  • “...ND-DGEPSGTAGVPI4LEVLKKRRLKDTCAVVTRYFGGIKLGAG 93 67 X66105G P27862 A30191P - --LYYEVGEKLLHCDPGHPIYQKWIGTYGG 2 P25052 Fig. 3. Detecting...”

SA0703 hypothetical protein from Staphylococcus aureus subsp. aureus N315
Aligns to 140:195 / 213 (26.3%), covers 100.0% of PF09186, 54.4 bits

• Characterizing the effects of inorganic acid and alkaline shock on the Staphylococcus aureus transcriptome and messenger RNA turnover
  Anderson, FEMS immunology and medical microbiology 2010
  • “...5 SA0629 hypothetical protein sa_c7859s6850_at 3.5 2.5 2.5 SA0662 hypothetical protein sa_c7985s6972_at 2.4 2.5 2.5 SA0703 hypothetical protein sa_c8013s6998_a_at 26.8 2.5 2.5 SA0711 hypothetical protein sa_c8905s7823_a_at * 2.5 2.5 2.5 SA0721 hypothetical protein sa_c8079s7064_a_at 2.4 2.5 5 SA0734 hypothetical protein sa_c8131s7116_a_at 2.1 2.5 2.5 SA0749 hypothetical...”
• Characterization of the Staphylococcus aureus heat shock, cold shock, stringent, and SOS responses and their effects on log-phase mRNA turnover
  Anderson, Journal of bacteriology 2006
  • “...SA0427 SA0436 SA0445 SA0480 SA0625 SA0639 SA0641 SA0692 SA0703 SA0730 SA0755 SA0768 SA0785 SA0821 SA0822 SA0870 SA0871 SA0920 SA1033 SA1044 SA1101 SA1117 SA1191...”

SAUSA300_0732 hypothetical protein from Staphylococcus aureus subsp. aureus USA300_FPR3757
USA300HOU_0775 hypothetical membrane protein from Staphylococcus aureus subsp. aureus USA300_TCH1516
Aligns to 140:195 / 213 (26.3%), covers 100.0% of PF09186, 52.7 bits

• Novel Regulation of Alpha-Toxin and the Phenol-Soluble Modulins by Peptidyl-Prolyl cis/trans Isomerase Enzymes in Staphylococcus aureus
  Keogh, Toxins 2019
  • “...Unknown function SAUSA300_1861 0.24 Conserved hypothetical protein SAUSA300_1007 0.24 Unknown function SAUSA300_0329 0.24 Unknown function SAUSA300_0732 0.23 Conserved hypothetical protein SAUSA300_0538 0.23 Energy metabolism SAUSA300_2251 0.22 Energy metabolism SAUSA300_2025 RsbU 0.22 Cellular processes (includes toxins and virulence factors) SAUSA300_2525 0.21 Conserved hypothetical protein SAUSA300_2510 0.20 Conserved...”
• Pre-epidemic evolution of the MRSA USA300 clade and a molecular key for classification
  Bianco, Frontiers in cellular and infection microbiology 2023
  • “...1 (445217) , set21 (452762) , thiD (638407) , mnhD1 (697737 , intergenic (737821) , USA300HOU_0775 (826842) , USA300HOU_0937 (982232) , abH2 (986803) , oppB3 (997946) USA300HOU_1022 (1089485) , isdE (1141794) , cfxE (1235660) , dnaE1 (1284408) , miaB (1319259) , sbcC O1377590) , intergenic (1414153)...”

X276_04450 YigZ family protein from Clostridium beijerinckii NRRL B-598
Aligns to 138:193 / 215 (26.0%), covers 98.2% of PF09186, 52.6 bits

• Phenotypic and Genomic Analysis of Clostridium beijerinckii NRRL B-598 Mutants With Increased Butanol Tolerance
  Vasylkivska, Frontiers in bioengineering and biotechnology 2020
  • “...10 5053669 C T X276_04620 Hypothetical protein 5053325 5055736 D N 11 5083112 C T X276_04450 YigZ family protein 5082972 5083619 V I 12 5084395 C T X276_04445 PLP-dependent aminotransferase family protein 5083996 5085438 M I 13 5275399 G A X276_03630 Carboxynorspermidine decarboxylase 5274563 5275702 H...”

spr2014 Conserved hypothetical protein from Streptococcus pneumoniae R6
Aligns to 138:193 / 211 (26.5%), covers 100.0% of PF09186, 51.6 bits

• Search for genes essential for pneumococcal transformation: the RADA DNA repair protein plays a role in genomic recombination of donor DNA
  Burghout, Journal of bacteriology 2007
  • “...been linked to the competence regulon, and one, spr2014, was located adjacent to the essential competence gene comFA. Directed mutants of seven of the...”
  • “...an AluI fragment. The same holds true for spr2014, which shares an AluI restriction fragment with comFA. Interestingly, several genes we selected, namely radA...”

P44842 IMPACT family member HI_0722 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Aligns to 141:196 / 206 (27.2%), covers 100.0% of PF09186, 49.6 bits

• Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20
  Shahbaaz, PloS one 2013
  • “...stabilisation system protein RelE/ParE 116 HP HI0719 949739 P44839 Endoribonuclease L-PSP 117. HP HI0722 949742 P44842 Translation elongation factor EFG, V domain 118. HP HI0725 949753 P44043 coproporphyrinogen III oxidase 119. HP HI0744 949771 P44854 rhodanese-related sulfurtransferase 120. HP HI0755 949515 P44863 Polysaccharide deacetylase 121. HP...”
• Screening for imprinted genes by allelic message display: identification of a paternally expressed gene impact on mouse chromosome 18
  Hagiwara, Proceedings of the National Academy of Sciences of the United States of America 1997
  • “...(Swiss-Prot no. P27862), H. influenzae YIGZ (Swiss-Prot no. P44842), B. subtilis YVYE (Swiss-Prot no. P32437), and T. aquaticus YPOL (Swiss-Prot no. P32438)....”

HI0722 hypothetical protein from Haemophilus influenzae Rd KW20
Aligns to 145:200 / 210 (26.7%), covers 100.0% of PF09186, 49.5 bits

• Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20
  Shahbaaz, PloS one 2013
  • “...P44041 Plasmid stabilisation system protein RelE/ParE 116 HP HI0719 949739 P44839 Endoribonuclease L-PSP 117. HP HI0722 949742 P44842 Translation elongation factor EFG, V domain 118. HP HI0725 949753 P44043 coproporphyrinogen III oxidase 119. HP HI0744 949771 P44854 rhodanese-related sulfurtransferase 120. HP HI0755 949515 P44863 Polysaccharide deacetylase...”

VC2757 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 143:198 / 210 (26.7%), covers 98.2% of PF09186, 48.3 bits

• Impact of Gene Repression on Biofilm Formation of Vibrio cholerae
  Pombo, Frontiers in microbiology 2022
  • “...VC2723-2732 VC2732 General secretion pathway protein E (GspE) 1 VC2750 GGDEF family protein 2 VC2754-2757 VC2757 Hypothetical protein 2 VC2760 DNA-Binding transcriptional regulator 1 VCA0011 Transcriptional regulator MalT 1 VCA0036 Serine/threonine transporter SstT 1 VCA0105-106 VCA0106 Hypothetical protein 1 VCA0107-120 VCA0114 Hypothetical protein 1 VCA0115 Hypothetical...”

lmo2516 similar to conserved hypothetical proteins from Listeria monocytogenes EGD-e
Aligns to 140:195 / 211 (26.5%), covers 100.0% of PF09186, 47.8 bits

• Survival of Listeria monocytogenes in Soil Requires AgrA-Mediated Regulation
  Vivant, Applied and environmental microbiology 2015
  • “...lmo0361 lmo1293 lmo1440 lmo2142 lmo0220 lmo2304 lmo2321 lmo2321 lmo2516 lmo0518 lmo0762 5.277 2.532 4.109 3.457 2.851 2.676 4.911 4.911 2.309 3.351 4.516 ncRNAs...”
• Deciphering the intracellular metabolism of Listeria monocytogenes by mutant screening and modelling
  Schauer, BMC genomics 2010
  • “...no 9.9 2.5 lmo1920 unknown protein 16.5 1.0 lmo2586 formate dehydrogenase -chain possible 2.4 2.2 lmo2516 conserved hypothetical protein possible 3.6 1.2 6 lmo2660 Transketolase rf 3.0 2.6 lmo2639 unknown protein, contains DUF1312 domain possible 5.5 1.0 lmo2764 xylose operon regulatory protein and to glucose kinase...”

LLKF_1118 hypothetical protein from Lactococcus lactis subsp. lactis KF147
Aligns to 137:192 / 209 (26.8%), covers 100.0% of PF09186, 45.0 bits

• Strain-Dependent Transcriptome Signatures for Robustness in Lactococcus lactis
  Dijkstra, PloS one 2016
  • “...positive 0.9 LLKF_1417 yngB fibronectin-binding protein A positive 1.9 LLKF_1270 ilvA threonine dehydratase negative 2.9 LLKF_1118 ykjI hypothetical protein positive 0.7 LLKF_1265 ymeB ABC transporter ATP-binding protein negative 0.3 LLKF_0493 pyrG CTP synthase positive 7.4 LLKF_0849 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase positive 10.2 LLKF_0664 scrK fructokinase positive 0.7...”

PP0593 conserved hypothetical protein TIGR00257 from Pseudomonas putida KT2440
Aligns to 132:188 / 194 (29.4%), covers 100.0% of PF09186, 42.0 bits

• UEG Week 2024 Poster Presentations
  , United European gastroenterology journal 2024
• UEG Week 2023 Poster Presentations
  , United European gastroenterology journal 2023

SMc01701 CONSERVED HYPOTHETICAL PROTEIN from Sinorhizobium meliloti 1021
Aligns to 131:187 / 194 (29.4%), covers 100.0% of PF09186, 38.8 bits

• The Sinorhizobium meliloti fur gene regulates, with dependence on Mn(II), transcription of the sitABCD operon, encoding a metal-type transporter
  Chao, Journal of bacteriology 2004
  • “...as hypothetical proteins (smc01637, sma1413, smc04431, smb20335, smc01701, smb21403, and smb20532). An updated annotation of these hypothetical proteins did not...”
  • “...(sitC) smc02506 (sitD) smc02474 smc02416 smc02025 smc01821 smc01701 smc01666 (mdeA) smc01664 smc01637 smc01124 (glnD) smb21403 smb20532 smb20335 sma2137 sma1413...”

SPy1617 conserved hypothetical protein from Streptococcus pyogenes M1 GAS
M5005_Spy_1328 Xaa-Pro dipeptidase from Streptococcus pyogenes MGAS5005
Aligns to 139:194 / 210 (26.7%), covers 100.0% of PF09186, 38.5 bits

• Optimization of Nuclear Localization Signal Composition Improves CRISPR-Cas12a Editing Rates in Human Primary Cells
  Luk, GEN biotechnology 2022 (secret)
• Genome-wide analysis of in vivo CcpA binding with and without its key co-factor HPr in the major human pathogen group A Streptococcus
  DebRoy, Molecular microbiology 2021
  • “...Yes ORF CTGCAATCGTTTACTT M5005_Spy_1323 Hypothetical protein L No NA 50 Yes Yes Yes Prom CTTGAAGCGCTTACTT M5005_Spy_1328 YigZ family protein S Yes Independent 50 Yes Yes Yes Prom CTTGAAGCGCTTACTT M5005_Spy_1325 Ribosomeassociated factor Y J Yes Fully dependent 51 Yes No No M5005_Spy_1366 Penicillinbinding protein 2X M No...”

G7SDH9 Xaa-Pro dipeptidase from Streptococcus suis D12
Aligns to 139:194 / 210 (26.7%), covers 100.0% of PF09186, 29.9 bits

• Sub-MIC Tylosin Inhibits Streptococcus suis Biofilm Formation and Results in Differential Protein Expression
  Wang, Frontiers in microbiology 2016
  • “...List of differentially expressed proteins in tylosin treated cells . Accession Description Fold change a G7SDH9 Putative uncharacterized protein 0.555777 A4W1G9 Phosphotransferase system cellobiose-specific component IIC 0.521547 G7SA24 Cold-shock DNA-binding domain protein 0.394546 F4EDP5 Putative uncharacterized protein 0.568016 R4NL31 MF3-like protein 0.63094 E9NQ29 CPS16V 0.452748 G5KZ73...”

FTN_0466 hypothetical protein from Francisella tularensis subsp. novicida U112
Aligns to 139:194 / 200 (28.0%), covers 100.0% of PF09186, 27.9 bits

• Molecular bases of proliferation of Francisella tularensis in arthropod vectors
  Asare, Environmental microbiology 2010
  • “...hypothetical protein 2 tnfn1_pw060419p03q186 FTN_0375 hypothetical protein 3 tnfn1_pw060420p02q163 FTN_0398 hypothetical membrane protein 3 tnfn1_pw060420p04q104 FTN_0466 conserved hypothetical protein 4 tnfn1_pw060328p08q148 FTN_0548 conserved hypothetical protein 2 # tnfn1_pw060418p04q176 FTN_0548 conserved hypothetical protein 2 # tnfn1_pw060328p06q164 FTN_0630 hypothetical protein 5 tnfn1_pw060328p05q141 FTN_0701 conserved hypothetical protein 5 tnfn1_pw060418p02q152...”
  • “...hypothetical protein 6 5 22% 2.3E+01 tnfn1_pw060419p03q187 FTN_1123 conserved hypothetical protein 3 20% 1.0E-01 tnfn1_pw060420p04q104 FTN_0466 conserved hypothetical protein 4 20% 1.3E+00 tnfn1_pw060328p06q185 FTN_0709 hypothetical protein 7 3 20% 1.3E+00 tnfn1_pw060510p04q192 FTN_1098 conserved hypothetical membrane protein 6 7 11% 2.7E-02 tnfn1_pw060510p01q184 FTN_1299 hypothetical protein 5 10%...”
• Molecular complexity orchestrates modulation of phagosome biogenesis and escape to the cytosol of macrophages by Francisella tularensis
  Asare, Environmental microbiology 2010
  • “...hypothetical protein 2 tnfn1_pw060419p03q186 FTN_0375 hypothetical protein 3 tnfn1_pw060420p02q163 FTN_0398 hypothetical membrane protein 3 tnfn1_pw060420p04q104 FTN_0466 conserved hypothetical protein 4 tnfn1_pw060328p08q148 FTN_0548 conserved hypothetical protein 2 # tnfn1_pw060418p04q176 FTN_0548 conserved hypothetical protein 2 # tnfn1_pw060328p06q164 FTN_0630 hypothetical protein 5 tnfn1_pw060328p05q141 FTN_0701 conserved hypothetical protein 5 tnfn1_pw060418p02q152...”

FTA_0467 hypothetical protein from Francisella tularensis subsp. holarctica FTA
Aligns to 139:194 / 200 (28.0%), covers 100.0% of PF09186, 27.0 bits

• Complete genome sequence of Francisella tularensis subspecies holarctica FTNF002-00
  Barabote, PloS one 2009
  • “...LF 0 drug resistance transporter, Bcr/CflA family protein G FTA_1589 TA 0 transposase ISFtu1 L FTA_0467 VA 0 hypothetical protein S FTA_0469 AS 1 FMN reductase, NADPH-dependent R FTA_1106 AS 1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase M FTA_1611 AS 1 phosphopyruvate hydratase G FTA_0592 DN 1 hypothetical protein FTA_0900...”

Or search for genetic data about PF09186 in the Fitness Browser