Family Search for PF09301 (DUF1970)

PF09301 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

VP16_BPPRD / P27392 Protein P16; GpS; Protein S from Enterobacteria phage PRD1 (Bacteriophage PRD1) (see paper)
Aligns to 2:113 / 117 (95.7%), covers 100.0% of PF09301, 208.4 bits

• function: Protein of the infection vertex complex, which increases the vertex stability. Anchors the vertex structure to the viral membrane. Essential for viral infectivity.
• Intrinsically disordered proteins of viruses: Involvement in the mechanism of cell regulation and pathogenesis
  Mishra, Progress in molecular biology and translational science 2020
  • “...ebolavirus (strain Mayinga-76) 8.53 64 DP00999 P03315 Structural polyprotein Semliki forest virus 11.33 65 DP01012 P27392 Protein P16 Enterobacteria phage PRD1 31.62 66 DP01013 P68927 Excisionase Escherichia phage HK022 30.56 67 DP01016 Q20MD5 Matrix protein 2 Influenza A virus (strain A/Udorn/1972 H3N2) 21.88 68 DP01031 Q99IB8...”

Nmag_0111 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase from Natrialba magadii ATCC 43099
Aligns to 112:222 / 477 (23.3%), covers 100.0% of PF09301, 69.4 bits

• A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T
  Siddaramappa, BMC genomics 2012
  • “...biosynthesis included six polysaccharide deacetylases (Nmag_1899, 2045, 2647, 3024, 3271, and 3278), two polyprenyl glycosyl-phosphotransferases (Nmag_0111 and 1184, 65% identity at the predicted protein level), an O-antigen polymerase (Nmag_0143), two UDP-N-acetylglucosamine 2-epimerases (Nmag_0149 and Nmag_0676), an acylneuraminate cytidylyltransferase (Nmag_0148), an O-acetyltransferase (Nmag_0150), a N-acylneuraminate-9-phosphate synthase (Nmag_0151),...”

rrnAC1586 unknown from Haloarcula marismortui ATCC 43049
Aligns to 112:211 / 470 (21.3%), covers 99.2% of PF09301, 65.4 bits

• Genome information management and integrated data analysis with HaloLex
  Pfeiffer, Archives of microbiology 2008
  • “...936 Shortened HQ3098A, OE3787R, NP2524A rrnAC3226 1,671 1,599 Extended NP5136A rrnAC3236 1,383 420 Extended OE1018F, rrnAC1586 rrnAC3256 546 663 Shortened NP3054A, HQ3084A, OE3752R rrnAC3268 678 498 Extended NP5010A, OE3731R, HQ3131A rrnAC3272 981 834 Extended NP5006A, HQ3129A, OE3735F rrnAC3279 1,107 1,032 Extended NP2398A, OE3722F, HQ3125A rrnAC3302 786...”

HBSAL_01115 sugar transferase from Halobacterium salinarum
Aligns to 111:216 / 471 (22.5%), covers 100.0% of PF09301, 50.9 bits

• Genome comparison reveals that Halobacterium salinarum 63-R2 is the origin of the twin laboratory strains NRC-1 and R1
  Pfeiffer, MicrobiologyOpen 2023
  • “...in strain 91R6. Strain Position Length (bp) G+C (%) Protein range 91R6 216,886264,382 47,497 56.4 HBSAL_01115 to HBSAL_01355 63R2 12,85174,116 61,266 56.1 LJ422_00060 to LJ422_00390 NRC1 10,60671,619 61,014 56.1 VNG_0011C to VNG_0080H R1 10,60672,635 62,030 56.2 OE_1018F to OE_1136F Note : For defining the left and...”

LJ422_00060 sugar transferase from Halobacterium salinarum NRC-34001
Aligns to 111:216 / 477 (22.2%), covers 99.2% of PF09301, 50.8 bits

• Genome comparison reveals that Halobacterium salinarum 63-R2 is the origin of the twin laboratory strains NRC-1 and R1
  Pfeiffer, MicrobiologyOpen 2023
  • “...G+C (%) Protein range 91R6 216,886264,382 47,497 56.4 HBSAL_01115 to HBSAL_01355 63R2 12,85174,116 61,266 56.1 LJ422_00060 to LJ422_00390 NRC1 10,60671,619 61,014 56.1 VNG_0011C to VNG_0080H R1 10,60672,635 62,030 56.2 OE_1018F to OE_1136F Note : For defining the left and right boundary of the replacement region of...”

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