Family Search for PF09393 (DUF2001)

PF09393 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

P54332 Phage-like element PBSX protein XkdM from Bacillus subtilis (strain 168)
Aligns to 1:141 / 147 (95.9%), covers 99.3% of PF09393, 182.5 bits

• Crystal Structures of R-Type Bacteriocin Sheath and Tube Proteins CD1363 and CD1364 From Clostridium difficile in the Pre-assembled State
  Schwemmlein, Frontiers in microbiology 2018
  • “...PHASER ( McCoy et al., 2007 ), using a truncated model of a monomer of P54332 from Bacillus subtilis ( B. subtilis ; PDB: 2GUJ; unpublished). Initial model building was performed using AUTOBUILD ( Terwilliger et al., 2008 ) and final models were obtained by iterative...”
  • “...molecular replacement using a truncated model of a single central -barrel from the phage-like element P54332 protein XkdM from B. subtilis (PDB: 2GUJ, unpublished), and the structural model was subsequently refined to a resolution of 1.5 with R work = 19.15% and R free = 22.00%...”

CDR20291_1442 phage tail tube protein from Clostridioides difficile R20291
CDR20291_1442 phage protein from Clostridium difficile R20291
Aligns to 3:147 / 156 (92.9%), covers 99.3% of PF09393, 181.7 bits

• Clostridioides difficile LuxS mediates inter-bacterial interactions within biofilms
  Slater, Scientific reports 2019
  • “...subunit 14 CDR20291_1433 1.154529376 phage portal protein 15 CDR20291_1436 1.156306053 phage major capsid protein 16 CDR20291_1442 1.085573967 phage protein 17 CDR20291_1444 1.257181603 phage protein 18 CDR20291_1449 1.008627768 phage tail tape measure protein 19 CDR20291_2554 0.895993497 PTS system glucose-specific transporter subunit IIA 20 CDR20291_2927 1.587075038 cellobiose-phosphate degrading...”

CDR20291_1207 phage tail tube protein from Clostridioides difficile R20291
CD1364 hypothetical protein from Clostridium difficile 630
CDR20291_1207 hypothetical protein from Clostridium difficile R20291
Aligns to 2:140 / 142 (97.9%), covers 99.3% of PF09393, 178.7 bits

• Clostridioides difficile LuxS mediates inter-bacterial interactions within biofilms
  Slater, Scientific reports 2019
  • “.... difficile No Gene ID log2 FoldChange Gene annotation 1 CDR20291_1206 0.994213972 hypothetical protein 2 CDR20291_1207 1.059645046 hypothetical protein 3 CDR20291_1208 1.227114763 hypothetical protein 4 CDR20291_1210 1.08584066 hypothetical protein 5 CDR20291_1211 1.0763802 hypothetical protein 6 CDR20291_1212 1.009946545 phage cell wall hydrolase 7 CDR20291_1214 1.09972952 phage protein...”
• Crystal Structures of R-Type Bacteriocin Sheath and Tube Proteins CD1363 and CD1364 From Clostridium difficile in the Pre-assembled State
  Schwemmlein, Frontiers in microbiology 2018
  • “...10.3389/fmicb.2018.01750 Microbiology Original Research Crystal Structures of R-Type Bacteriocin Sheath and Tube Proteins CD1363 and CD1364 From Clostridium difficile in the Pre-assembled State Schwemmlein Nina 1 Pippel Jan 1 Gazdag Emerich-Mihai 1 Blankenfeldt Wulf 1 2 * 1 Structure and Function of Proteins, Helmholtz Centre for...”
  • “...small angle X-ray scattering data of the sheath and tube proteins CD1363 (39 kDa) and CD1364 (16 kDa) from C. difficile strain CD630 in a monomeric pre-assembly form at 1.9 and 1.5 resolution, respectively. The tube protein CD1364 displays a compact fold and shares highest structural...”
• Novel high-molecular-weight, R-type bacteriocins of Clostridium difficile
  Gebhart, Journal of bacteriology 2012
  • “...function Comment CD1359 CD1360 CD1360A CD1361 CD1362 CD1363 CD1364 CD1365 CD1365A CD1366 CD1367 CD1368 CD1369 CD1370 CD1371 CD1372 CD1373 CD1374 CD1375 CD1376...”

RF|NP_945293.1 core tail protein from Streptococcus phage EJ-1 (see 2 papers)
CAE82136.1 core tail protein from Streptococcus phage EJ-1 (see 2 papers)
Aligns to 2:146 / 154 (94.2%), covers 99.3% of PF09393, 154.5 bits

CLP_1280 phage tail tube protein from Clostridium butyricum E4 str. BoNT E BL5262
Aligns to 2:143 / 144 (98.6%), covers 95.0% of PF09393, 65.8 bits

• Type E Botulinum Neurotoxin-Producing Clostridium butyricum Strains Are Aerotolerant during Vegetative Growth
  Camerini, mSystems 2019
  • “...GO not assigned 4 489502201 CLP_3345 Uncharacterized protein 1.55 Biol GO not assigned 5 489504250 CLP_1280 Uncharacterized protein 1.16 Biol GO not assigned 6 489504278 CLP_1290 Uncharacterized protein 1.28 Biol GO not assigned 7 489504289 CLP_1282 Uncharacterized protein * Biol GO not assigned 8 489504297 CLP_1288...”

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