Family Search for PF09400 (DUF2002)

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PF09400 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YgaC / b2671 DUF2002 domain-containing protein YgaC from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b2671 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:110 / 114 (96.5%), covers 100.0% of PF09400, 215.6 bits

• Genome-Scale Mapping of Escherichia coli σ54 Reveals Widespread, Conserved Intragenic Binding
  Bonocora, PLoS genetics 2015
  • “...- b1731 cedA 2675 9.191 OA04 2802707 12 G TGGC ATGAATA TTG AT 2802718 - b2671 ygaC 4691 10.229 OA05 3144330 61 C TGGC ATATATT TTGC C 3144316 + b3001 gpr 1589 11.588 OA06 3370638 3 T TGG TATGAAAA TTG TA 3370640 + b3227 dcuD 2253...”

STM2801 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 1:110 / 116 (94.8%), covers 100.0% of PF09400, 208.6 bits

• Stress response, amino acid biosynthesis and pathogenesis genes expressed in Salmonella enterica colonizing tomato shoot and root surfaces
  Han, Heliyon 2020
  • “...yebG STM1882 DNA damage-inducible protein 1.3 0.005 yfcC STM2339 c4-dicarboxylate anaerobic carrier 1.1 0.005 ygaC STM2801 hypothetical protein 1.0 0.007 yjbH STM4225 outer membrane lipoprotein 1.2 0.006 yjcB STM4263 inner membrane protein 1.1 0.008 STM1650 STM1650 putative reverse transcriptase 1.4 0.004 1.3 0.006 STM1585 STM1585 outer...”
• Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes
  Soyer, BMC evolutionary biology 2009
  • “...protein C precursor 1134 Ch# (0.0986) 274 STM0743 - Putative lipoprotein 273 Ch# (0.1830) - STM2801 ygaC Conserved hypothetical protein 300 Pty# (0.020) - STM0301 safC Outer membrane usher, Salmonella atypical fimbria 2508 TO (0.0104) 85, 111, 405, 692 Genes in JCVI role category "Cellular processes"...”
• Genome expression analyses revealing the modulation of the Salmonella Rcs regulon by the attenuator IgaA
  Mariscotti, Journal of bacteriology 2009
  • “...30, 55 STM2118 wza 5.1 0.7 0.7 5.1 0.2 23, 55 STM2407 STM2801 STM4100 STM4105 ypeC ygaC metB metF 2.2 3.0 2.4 2.5 0.7 1.5 0.2 0.5 0.6 2.3 0.5 0.2 0.02 0.4 0.4...”

YPO2653 conserved hypothetical protein from Yersinia pestis CO92
YPTB2953 hypothetical protein from Yersinia pseudotuberculosis IP 32953
Aligns to 1:110 / 111 (99.1%), covers 100.0% of PF09400, 201.1 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...YPO2674 putative exported protein (< 0.001) YPTB2951 YPO2657 putative mobilization protein 0.566 (< 0.001) YPTB2953 YPO2653 conserved hypothetical protein 0.639 (0.027) YPTB2954 (asr) YPO2652 putative acid shock protein 1.815 (0.033) YPTB3007 YPO1040 conserved hypothetical protein 0.728 (0.024) 0.73 (0.025) YPTB3039 YPO0791 hypothetical protein 0.545 (0.007) YPTB3041...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...YPTB2935 YPO2674 putative exported protein (< 0.001) YPTB2951 YPO2657 putative mobilization protein 0.566 (< 0.001) YPTB2953 YPO2653 conserved hypothetical protein 0.639 (0.027) YPTB2954 (asr) YPO2652 putative acid shock protein 1.815 (0.033) YPTB3007 YPO1040 conserved hypothetical protein 0.728 (0.024) 0.73 (0.025) YPTB3039 YPO0791 hypothetical protein 0.545 (0.007)...”

Or search for genetic data about PF09400 in the Fitness Browser