Family Search for PF09428 (DUF2011)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF09428 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

MGG_17384 uncharacterized protein from Pyricularia oryzae 70-15
Aligns to 74:167 / 284 (33.1%), covers 98.9% of PF09428, 93.1 bits

• Dysfunctional Pro1 leads to female sterility in rice blast fungi
  Uchida, iScience 2023
  • “...hypothetical proteins, could not be obtained. Deletion of the remaining six genes, MGG_00791, MGG_00771, MGG_00747, MGG_17384, MGG_11512, and MGG_17398, resulted in no remarkable changes in mating ability ( FigureS3 ). To test whether the five genes MGG_11498, MGG_00779, MGG_00722, MGG_00706, MGG_00693 were responsible for loss of...”

YNL050C Putative protein of unknown function; YNL050c is not an essential gene from Saccharomyces cerevisiae
P53952 Uncharacterized protein YNL050C from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Aligns to 77:188 / 270 (41.5%), covers 96.6% of PF09428, 66.5 bits

• Insights into cell robustness against lignocellulosic inhibitors and insoluble solids in bioethanol production processes
  Moreno, Scientific reports 2022
  • “...SIT1, TIS11 Ribosome biogenesis, RNA processing CMS1, ECM2, FAL1, FCF2, HGH1, NOP14, NOP7, ROK1, YCR016W, YNL050C Maltose metabolic process IMA1, MAL32, MAL31, MAL33 (MPH2) GTP/GMP biosynthetic process IMD1, IMD2, IMD3 Peptide transport BAP2, PTR2, (TAT1, MUP1, DIP5) Water transport AQY2, YLL053C a Upregulated and downregulated genes...”
• Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory
  Luo, BMC bioinformatics 2007
  • “...examined the functional association of six unknown proteins ( YJL122W , YML074C , YMR269W , YNL050C , YOR154W , and YCR016W ) predicted to be involved in ribosomal biogenesis. While YJL122W and YCR016W were suggested to be involved in ribosomal biogenesis by other methods (Table 2...”
  • “...Consistent with prediction nucleolar protein [40]; protein possibly involved in protein synthesis [64] Module 15 YNL050C ribosome biogenesis no Consistent with prediction Module 15 YOR146W ribosome biogenesis no ND Module 15 YOR154W ribosome biogenesis no Consistent with prediction Module 15 YCR016W ribosome biogenesis yes [63] Consistent...”
• Removal of a single alpha-tubulin gene intron suppresses cell cycle arrest phenotypes of splicing factor mutations in Saccharomyces cerevisiae
  Burns, Molecular and cellular biology 2002
  • “...Increased in cef1-13 Intron QCR10 COF1 ACT1 MATA1-Int1 YNL050c RUB1 SRC1-Int1 SRC1-Int2 RPL39 RPL33A RPL34A RPL27B ARP9 YBL059w ARP2 MMS2 RPL17A YIP3 MATA1-Int2...”
• Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast
  Davis, Nucleic acids research 2000
  • “...YML067C, YML094W, YMR033W, YMR116C, YMR201C, YMR292W, YNL044W, YNL050C, YNL147W, YNL246W, YNL265C, YNR053C, YPL129W, YPR028W, YPR063C and YPR187W. The next...”
• Exploring hierarchical and overlapping modular structure in the yeast protein interaction network
  Liu, BMC genomics 2010
  • “...metabolic process Q12125 23.45 vesicle-mediated transport P53212 13.03 RNA metabolic process Q04562 20.50 vesicle-mediated transport P53952 13.03 RNA metabolic process Q12327 20.50 vesicle-mediated transport The Swiss-Prot ID of proteins is listed in the Protein column, corresponding P-value (-log p-value > 10) is listed in the P-value...”

YKI6_SCHPO / Q9UUH6 Uncharacterized nucleolar protein C630.06c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
Aligns to 63:136 / 188 (39.4%), covers 67.4% of PF09428, 34.4 bits

Or search for genetic data about PF09428 in the Fitness Browser