Family Search for PF09526 (DUF2387)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF09526 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PA0068 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 6:80 / 91 (82.4%), covers 100.0% of PF09526, 131.8 bits

• Development of a multilocus sequence typing scheme for the opportunistic pathogen Pseudomonas aeruginosa
  Curran, Journal of clinical microbiology 2004
  • “...8722 6950 PA0108 PA0061 1330 M 8103 7272 PA0098 PA0068 8440 PA0094 PA0107 PA0020 7306 8113 PA0076 PA0043 PA0034 PA0022 Liverpool a PA0067 8364 PA0097 8405 5973...”

PP0097 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 9:83 / 93 (80.6%), covers 100.0% of PF09526, 131.5 bits

• UEG Week 2023 Poster Presentations
  , United European gastroenterology journal 2023

VP2784 hypothetical protein from Vibrio parahaemolyticus RIMD 2210633
Aligns to 3:61 / 66 (89.4%), covers 69.4% of PF09526, 79.4 bits

• Direct RNA Sequencing Unfolds the Complex Transcriptome of Vibrio parahaemolyticus
  Al, mSystems 2021
  • “...are transcribed in two operons. Another case is VP2784VP2783 , in which the first gene, VP2784 , is transcribed mainly in the operon VP2784VP2783 , but only 14% of the reads that were mapped to VP2783 were attributed to this operon. The rest were transcribed from...”

T_RS20585 YheV family putative zinc ribbon protein from Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Aligns to 3:63 / 66 (92.4%), covers 79.2% of PF09526, 70.5 bits

• Iron Deficiency Modulates Metabolic Landscape of Bacteroidetes Promoting Its Resilience during Inflammation
  Lewis, Microbiology spectrum 2023
  • “...nutrient uptake outer membrane protein, TonB-dependent receptor, hypothetical proteins 6.4 to 3.4 9E-06 to 0.011 T_RS20585 to 610 BT4078 to 83 Hypothetical proteins, IPT/TIG domain-containing protein, RagB/SusD family nutrient uptake outer membrane protein, DUF4361 domain-containing protein 2.5 0.57 BT_RS20625 BT4086 DUF5004 domain-containing protein 14.3 to 3.4...”

YheV / b4551 DUF2387 domain-containing protein YheV from Escherichia coli K-12 substr. MG1655 (see 2 papers)
Aligns to 3:63 / 66 (92.4%), covers 81.9% of PF09526, 69.5 bits

SO0886 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 5:61 / 66 (86.4%), covers 65.3% of PF09526, 57.8 bits

• Phenotypic Characterisation of Shewanella oneidensis MR-1 Exposed to X-Radiation
  Brown, PloS one 2015
  • “...(rpmC) inferred from homology (Locus SO0239). 7269 72667274 + 7269 Da uncharacterised protein (predicted; Locus SO0886); 7263 Da Molybdenum-pterin binding protein (MopI) (predicted; Locus SO1799). 7393 73927393 - 7392 Da uncharacterised protein (predicted; Locus SO3548). 7603 76017607 + 7603 Da uncharacterised lambda phage protein (predicted; Locus...”
  • “...Gy 6552 65476555 - No match 7269 72667274 + 7269 Da uncharacterised protein (predicted; Locus SO0886). 7366 73617370 - 7365 Da uncharacterised protein (predicted; Locus SO4740); 7368 Da uncharacterised lambda phage protein (predicted; Locus SO3010); 7368 Da DUF3012 domain-containing lipoprotein (predicted; Locus SO0515). 7393 73927394 -...”
• Global transcriptome analysis of the heat shock response of Shewanella oneidensis
  Gao, Journal of bacteriology 2004
  • “...25-min heat shock period. Genes encoding hypothetical proteins (SO0886, 1443, 2542, 2911, 3274, 3377, 3381, 3512, 3585, 3682, 3765, and 4593) account for 45%...”

A1S_3048 hypothetical protein from Acinetobacter baumannii ATCC 17978
Aligns to 1:62 / 69 (89.9%), covers 62.5% of PF09526, 55.8 bits

• Mucin acts as a nutrient source and a signal for the differential expression of genes coding for cellular processes and virulence factors in Acinetobacter baumannii
  Ohneck, PloS one 2018
  • “...0.000870159 Ferric acinetobactin periplasmic binding protein, BauB A1S_2387 -4.349789327 0.002566617 Ferric acinetobactin transport protein, BauE A1S_3048 -3.092680681 1.64293E -05 Uncharacterized small metal-binding protein A1S_3174 -5.393271807 0.000347121 Bacterioferritin-associated ferredoxin A1S_3339 -2.168086854 0.036495615 Ferrichrome-iron receptor Phosphate acquisition and metabolism A1S_0462 -4.856772439 4.37285E -05 Phosphatase A1S_0463 -21.07140251 3.86471E -14...”

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