Family Search for PF09612 (HtrL_YibB)

PF09612 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YibB / b3618 protein HtrL from Escherichia coli K-12 substr. MG1655 (see 2 papers)
HTRL_ECOLI / P25666 Protein HtrL from Escherichia coli (strain K12) (see paper)
b3618 involved in lipopolysaccharide biosynthesis from Escherichia coli str. K-12 substr. MG1655
Aligns to 3:268 / 285 (93.3%), covers 100.0% of PF09612, 435.9 bits

• Transcriptomic analysis of Escherichia coli O157:H7 and K-12 cultures exposed to inorganic and organic acids in stationary phase reveals acidulant- and strain-specific acid tolerance responses
  King, Applied and environmental microbiology 2010
  • “...b1016 b1847 b2152 b3096 b3280 b3546 b3618 b4060 Signal transduction mechanisms Transcription Predicted methyltransferase Predicted ribosome maturation factor...”
• Analysis of promoter targets for Escherichia coli transcription elongation factor GreA in vivo and in vitro
  Stepanova, Journal of bacteriology 2007
  • “...initiates assembly 30S ribosomal subunit protein S12 htrLc b3618 1.6 Involved in lipopolysaccharide biosynthesis rpmG rpmB b3636 b3637 2.4 2.6 50S ribosomal...”

EDL933_4882, EDL933_RS24005 protein YibB from Escherichia coli O157:H7 str. EDL933
Aligns to 3:268 / 285 (93.3%), covers 100.0% of PF09612, 431.9 bits

• Transcriptomic and proteomic analysis of the virulence inducing effect of ciprofloxacin on enterohemorrhagic Escherichia coli
  Kijewski, PloS one 2024
  • “...transporter, ATP-binding protein LptB --- -5.1 2.8 EDL933_RS23990 EDL933_4879 waaH Glycosyltransferase 2.4 --- --- EDL933_RS24005 EDL933_4882 yibB Protein YibB -involved in lipopolysaccharide biosynthesis 2.9 --- --- EDL933_RS24020 EDL933_4885 rfaC Lipopolysaccharide heptosyltransferase RfaC 2 3.5 4.1 EDL933_RS24025 EDL933_4886 rfaL O-antigen ligase RfaL 2.3 4.2 -1.2 EDL933_RS24045 EDL933_4890...”
  • “...ABC transporter, ATP-binding protein LptB --- -5.1 2.8 EDL933_RS23990 EDL933_4879 waaH Glycosyltransferase 2.4 --- --- EDL933_RS24005 EDL933_4882 yibB Protein YibB -involved in lipopolysaccharide biosynthesis 2.9 --- --- EDL933_RS24020 EDL933_4885 rfaC Lipopolysaccharide heptosyltransferase RfaC 2 3.5 4.1 EDL933_RS24025 EDL933_4886 rfaL O-antigen ligase RfaL 2.3 4.2 -1.2 EDL933_RS24045...”

ECs4496 involved in lipopolysaccharide biosynthesis from Escherichia coli O157:H7 str. Sakai
Aligns to 8:273 / 290 (91.7%), covers 100.0% of PF09612, 431.8 bits

• Transcriptomic analysis of Escherichia coli O157:H7 and K-12 cultures exposed to inorganic and organic acids in stationary phase reveals acidulant- and strain-specific acid tolerance responses
  King, Applied and environmental microbiology 2010
  • “...ECs0006 ECs0251 ECs1263 ECs2557 ECs3044 ECs3978 ECs4146 ECs4425 ECs4496 ECs5042 b3283 b3700 b2571 b1422 b2531 b3067 b3649 b3783 b4063 b1211 b2532 b3282 b0006...”

Or search for genetic data about PF09612 in the Fitness Browser