Family Search for PF09680 (YjcZ_2)

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PF09680 hits 15 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SSCA_BACSU / C0H3Y2 Small spore coat assembly protein A from Bacillus subtilis (strain 168) (see paper)
BSU_09958, YP_003097699 spore assembly and germination protein from Bacillus subtilis subsp. subtilis str. 168
BSU09958 hypothetical protein from Bacillus subtilis subsp. subtilis str. 168
Aligns to 4:27 / 28 (85.7%), covers 100.0% of PF09680, 51.4 bits

• function: Spore protein involved in the assembly of several components of the spore coat, including CotB, CotG and CotH, and in spore germination.
  disruption phenotype: Spores of the null mutant show partial lack of assembly of several coat components, including CotB, CotG and CotH, and impairment of response during germination.
• Diversity and evolutionary dynamics of spore-coat proteins in spore-forming species of Bacillales
  Secaira-Morocho, Microbial genomics 2020
  • “...8 ] spsI BSU_37810 Outer layer Spore polysaccharide synthesis Nucleotidyl transferase [ 8 ] sscA BSU_09958 nd Spore assembly nd [ 8 ] tasA BSU_24620 nd nd Camelysin metallo-endopeptidase [ 26 ] tgl BSU_31270 Inner layer Introduction of cross-links in the coat for GerQ and SafA...”
• A novel small protein of Bacillus subtilis involved in spore germination and spore coat assembly.
  Kodama, Bioscience, biotechnology, and biochemistry 2011 (PubMed)
  • GeneRIF: SscA (yhzE) is a novel spore protein involved in the assembly of several components of the spore coat, including CotB, CotG, and CotH, and is associated with spore germination.
• Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement
  Borriss, Microbial biotechnology 2018
  • “...sncZ No identified function: borders undefined 20525796 suRNA BSU_misc_RNA_8 626446 aswA Adenine riboswitch 25573585 CDS BSU09958 1071402 sscA Spore assembly and germination protein 21670523 CDS BSU09959 1071613 sscB Spore assembly and germination protein 21670523 suRNA BSU_misc_RNA_67 1233405 roxS Small regulatory RNA (NO regulated) 28436820 CDS BSU12815...”

RBAM_RS05150 sporulation protein YhzE1 from Bacillus velezensis FZB42
Aligns to 4:27 / 28 (85.7%), covers 100.0% of PF09680, 51.4 bits

• Key Impact of an Uncommon Plasmid on Bacillus amyloliquefaciens subsp. plantarum S499 Developmental Traits and Lipopeptide Production
  Molinatto, Frontiers in microbiology 2017
  • “...RBAM_RS05140 ABC transporter ATP-binding protein 98 ecsB AS588_RS10435 RBAM_RS05145 ABC transporter permease 98 ecsC AS588_RS10430 RBAM_RS05150 ABC transporter-associated protein 98 Efp AS588_RS04045 RBAM_RS11340 Elongation factor P 98 epsA-O AS588_RS15840-AS588_RS15910 RBAM_RS15740-RBAM_RS15810 Operon for capsular polysaccharides biosynthesis 9698 degU AS588_RS16430 RBAM_RS16295 Two-component response regulator 99 fla-che AS588_RS07105-AS588_RS07250 RBAM_RS07995-RBAM_RS08140...”

BSU14569 hypothetical protein from Bacillus subtilis subsp. subtilis str. 168
Aligns to 24:47 / 52 (46.2%), covers 95.8% of PF09680, 50.0 bits

• rocF affects the production of tetramethylpyrazine in fermented soybeans with Bacillus subtilis BJ3-2
  Liu, BMC biotechnology 2022
  • “...Up BSU39580 12.584 358.188 4.82 4.26E-10 1.04E-07 Up BSU12310 12.634 355.103 4.8 3.10E-12 1.03E-09 Up BSU14569 53.082 1210.986 4.51 1.17E-07 1.77E-05 Up BSU00240 138.86 2344.553 4.08 1.60E-09 3.65E-07 Up BSU02970 10.84 146.608 3.75 1.15E-06 1.40E-04 Up BSU02170 33.435 435.053 3.7 1.81E-09 3.87E-07 Up BSU11740 25.23 323.403...”

BCAH187_A1120 hypothetical protein from Bacillus cereus AH187
Aligns to 8:31 / 37 (64.9%), covers 100.0% of PF09680, 47.2 bits

• Sporulation is dispensable for the vegetable-associated life cycle of the human pathogen Bacillus cereus
  Antequera-Gómez, Microbial biotechnology 2021
  • “...Sporulation sigma factorprocessing peptidase b BCAH187_A0925 Spore germination protein AC BCAH187_A1089 Acidsoluble spore protein b BCAH187_A1120 YjcZ family sporulation protein a , b BCAH187_A1125 YjcZ family sporulation protein a , b BCAH187_A1216 YjcZ family sporulation protein a , b BCAH187_A1409 Sporespecific protein b BCAH187_A2125 Spore permease...”

BCAH187_A4093 hypothetical protein from Bacillus cereus AH187
Aligns to 24:47 / 48 (50.0%), covers 91.7% of PF09680, 46.7 bits

• Sporulation is dispensable for the vegetable-associated life cycle of the human pathogen Bacillus cereus
  Antequera-Gómez, Microbial biotechnology 2021
  • “...a . Spore permease b BCAH187_A3202 Spore germination protein KA BCAH187_A3600 GerSB; Spore germination protein BCAH187_A4093 YjcZ family sporulation protein a , b BCAH187_A4323 SpoIIIAA; stage III sporulation protein AA BCAH187_A4629 Germination protein gerE BCAH187_A5258 Exosporium leader peptidecontaining protein b BCAH187_A5308 SpoVAD; stage V sporulation protein...”

BCAH187_A2711 hypothetical protein from Bacillus cereus AH187
Aligns to 23:46 / 50 (48.0%), covers 100.0% of PF09680, 46.3 bits

• Sporulation is dispensable for the vegetable-associated life cycle of the human pathogen Bacillus cereus
  Antequera-Gómez, Microbial biotechnology 2021
  • “...regulatory protein a , b BCAH187_A2546 Exosporium protein H BCAH187_A2674 Spore germination protein gerPA/gerPF b BCAH187_A2711 YjcZ family sporulation protein a , b BCAH187_A2919 CotX; spore coat protein X BCAH187_A2920 CotW; spore coat protein W b BCAH187_A2921 Spore coat protein X BCAH187_A3146 CotF; spore coat protein...”

CG479_RS07395 YjcZ family sporulation protein from Bacillus cytotoxicus
Aligns to 9:32 / 38 (63.2%), covers 100.0% of PF09680, 46.1 bits

• Whole-genome-based phylogeny of Bacillus cytotoxicus reveals different clades within the species and provides clues on ecology and evolution
  Stevens, Scientific reports 2019
  • “...isomerase CG479_RS15270 CG479_RS15270 glycerophosphodiester phosphodiesterase G479_RS06185 G479_RS06185 LTA synthase family protein CG479_RS07295 CG479_RS07295 transcriptional regulator CG479_RS07395 CG479_RS07395 sporulation protein YjcZ CG479_RS07860 CG479_RS07860 TetR/AcrR family transcriptional regulator CG479_RS07990 CG479_RS07990 thiamine biosynthesis protein ThiF CG479_RS08090 CG479_RS08090 GbsR/MarR family transcriptional regulator CG479_RS08120 CG479_RS08120 aspartate aminotransferase family protein CG479_RS09375 CG479_RS09375...”

BSU20190 hypothetical protein from phage SPbeta from Bacillus subtilis subsp. subtilis str. 168
Aligns to 15:38 / 39 (61.5%), covers 95.8% of PF09680, 44.5 bits

• Secondary structural entropy in RNA switch (Riboswitch) identification
  Manzourolajdad, BMC bioinformatics 2015
  • “...0.3694 393 ggaA BSU35690 0.859 36 2160701 2160857 forward BSU20000 yosU -1938 0.4395 9028 yosA BSU20190 0.859 37 1097850 1098006 reverse BSU10230 yhfH -191 0.465 79 gltT BSU10220 0.858 38 1467020 1467176 forward BSU13960 ykwC -342 0.414 707 pbpH BSU13980 0.857 39 191850 192006 forward BSU01590...”
  • “...nt 2160707 2160906 forward BSU20000 yosU -1924 -34.70 - 0.3050 126.3850021 - 0.4300 9002 yosA BSU20190 0.8132891059 200 nt 192805 193004 forward BSU01590 ybaS -13121 -48.80 - 0.4150 124.4029999 - 0.3650 1302 trnSL-Glu2 BSU_tRNA_75 0.8131257892 200 nt 2217640 2217839 forward BSU20929 yoyI -4463 -44.10 - 0.2800...”

BSU19749 hypothetical protein from Bacillus subtilis subsp. subtilis str. 168
Aligns to 13:36 / 37 (64.9%), covers 95.8% of PF09680, 43.3 bits

• Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement
  Borriss, Microbial biotechnology 2018
  • “...suRNA BSU_misc_RNA_74 2070115 asrE Small regulatory antitoxin RNA, toxinantitoxin type I system (BsrE/AsrE) 26940229 CDS BSU19749 2146053 yoyG Putative toxin of a type I toxin family (sporulation operon) 20156992, 21670523 fCDS BSU20049 2160397 nrdFBc Phage SP beta nucleoside diphosphate reductase minor subunit (Cterminus) 23391036 fCDS BSU20051...”

YJCZ_BACSU / C0H3Y8 Sporulation protein YjcZ from Bacillus subtilis (strain 168) (see paper)
Aligns to 26:49 / 49 (49.0%), covers 100.0% of PF09680, 43.2 bits

SSCB_BACSU / L8EBJ6 Probable small spore coat assembly protein B; ORF-62 from Bacillus subtilis (strain 168) (see paper)
BSU09959 spore and germination protein from Bacillus subtilis subsp. subtilis str. 168
Aligns to 4:27 / 28 (85.7%), covers 91.7% of PF09680, 42.7 bits

• Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement
  Borriss, Microbial biotechnology 2018
  • “...aswA Adenine riboswitch 25573585 CDS BSU09958 1071402 sscA Spore assembly and germination protein 21670523 CDS BSU09959 1071613 sscB Spore assembly and germination protein 21670523 suRNA BSU_misc_RNA_67 1233405 roxS Small regulatory RNA (NO regulated) 28436820 CDS BSU12815 1348356 spoIISC Three component toxin/antitoxin/antitoxin SpoIISABC, antitoxin C 25039482, 26300872,...”

BCAH187_A1125 hypothetical protein from Bacillus cereus AH187
Aligns to 19:46 / 47 (59.6%), covers 100.0% of PF09680, 38.8 bits

• Sporulation is dispensable for the vegetable-associated life cycle of the human pathogen Bacillus cereus
  Antequera-Gómez, Microbial biotechnology 2021
  • “...protein AC BCAH187_A1089 Acidsoluble spore protein b BCAH187_A1120 YjcZ family sporulation protein a , b BCAH187_A1125 YjcZ family sporulation protein a , b BCAH187_A1216 YjcZ family sporulation protein a , b BCAH187_A1409 Sporespecific protein b BCAH187_A2125 Spore permease b BCAH187_A2217 AbrB family transcriptional regulator BCAH187_A2515 Spo0E;...”

BCAH187_A1216 hypothetical protein from Bacillus cereus AH187
Aligns to 20:43 / 47 (51.1%), covers 95.8% of PF09680, 38.6 bits

• Sporulation is dispensable for the vegetable-associated life cycle of the human pathogen Bacillus cereus
  Antequera-Gómez, Microbial biotechnology 2021
  • “...YjcZ family sporulation protein a , b BCAH187_A1125 YjcZ family sporulation protein a , b BCAH187_A1216 YjcZ family sporulation protein a , b BCAH187_A1409 Sporespecific protein b BCAH187_A2125 Spore permease b BCAH187_A2217 AbrB family transcriptional regulator BCAH187_A2515 Spo0E; stage 0 sporulation regulatory protein a , b...”

BMMGA3_09580 YjcZ family sporulation protein from Bacillus methanolicus MGA3
Aligns to 20:43 / 45 (53.3%), covers 91.7% of PF09680, 38.6 bits

• Developing a Riboswitch-Mediated Regulatory System for Metabolic Flux Control in Thermophilic Bacillus methanolicus
  Irla, International journal of molecular sciences 2021
  • “...BMMGA3_11740 Hypothetical protein 160.00 p18 BMMGA3_02750 d -Isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 107.14 p19 BMMGA3_09580 Putative membrane protein 66.73 p20 BMMGA3_09845 Hypothetical protein 39.59 ijms-22-04686-t002_Table 2 Table 2 Bacterial strains and plasmids used in this study. Strain Name Relevant Characteristics Reference E. coli DH5 General...”

CG479_RS18510 YjcZ family sporulation protein from Bacillus cytotoxicus
Aligns to 15:38 / 55 (43.6%), covers 91.7% of PF09680, 38.4 bits

• Whole-genome-based phylogeny of Bacillus cytotoxicus reveals different clades within the species and provides clues on ecology and evolution
  Stevens, Scientific reports 2019
  • “...CG479_RS17000 CG479_RS17000 non-ribosomal peptide synthetase G479_RS18300 G479_RS18300 S-layer protein CG479_RS18315 CG479_RS18315 ArsR family transcriptional regulator CG479_RS18510 CG479_RS18510 YjcZ family sporulation protein CG479_RS18930 CG479_RS18930 NupC/NupG family nucleoside CNT transporter CG479_RS20300 CG479_RS20300 NADH-quinone oxidoreductase subunit C CG479_RS20520 CG479_RS20520 DNA-directed RNA polymerase subunit delta CG479_RS21035 CG479_RS21035 transcriptional antiterminator BglG...”

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