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Family Search for PF09822 (ABC_transp_aux)

PF09822.9 hits 15 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

TC 3.A.1.132.1 / Q93LN0 GldG, component of The GldAFG putative ABC transporter required for ratchet-type gliding motility; may function in secretion of a macromolecule such as an exopolysaccharide. (Agarwal et al., 1997; Hunnicutt et al., 2002; McBride and Zhu 2013). Soluble GldG homologues (no TMSs) are found in eukaryotes (e.g. intraflagellar protein transporter, IPT52 of Chlamydomonas reinhardtii; XP_001692161) from Cytophaga johnsonae (Flavobacterium johnsoniae) (see paper)
Aligns to 32:319 / 561 (51.3%), covers 99.6% of PF09822, 256.5 bits

THC0290_1849 gliding motility-associated ABC transporter substrate-binding protein GldG from Flavobacterium psychrophilum
Aligns to 32:318 / 559 (51.3%), covers 99.6% of PF09822, 251.7 bits

Gilli_3446 gliding motility-associated ABC transporter substrate-binding protein GldG from Gillisia limnaea DSM 15749
Aligns to 30:317 / 557 (51.7%), covers 99.6% of PF09822, 241.0 bits

PA3670 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
PA14_16890 putative auxiliary component of ABC transporter (NCBI) from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 33:301 / 615 (43.7%), covers 99.6% of PF09822, 232.9 bits

PA4039 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 33:293 / 600 (43.5%), covers 98.9% of PF09822, 208.8 bits

Q2SDB0 ABC-type transport system involved in multi-copper enzyme maturation, permease component from Hahella chejuensis (strain KCTC 2396)
2 alignments in 280:692 / 978 (42.1%), covering up to 93.3% of PF09822, 207.2 bits

BB0752 B. burgdorferi predicted coding region BB0752 (NCBI ptt file) from Borrelia burgdorferi B31
Aligns to 31:287 / 502 (51.2%), covers 99.6% of PF09822, 155.8 bits

Athe_2368 hypothetical protein (RefSeq) from Anaerocellum thermophilum DSM 6725
Athe_2368 GldG family protein from Caldicellulosiruptor bescii DSM 6725
Aligns to 48:289 / 485 (49.9%), covers 100.0% of PF09822, 127.2 bits

TPASS_0879 hypothetical protein (RefSeq) from Treponema pallidum subsp. pallidum SS14
TP0879 conserved hypothetical protein (NCBI ptt file) from Treponema pallidum subsp. pallidum str. Nichols
Aligns to 29:287 / 493 (52.5%), covers 99.6% of PF09822, 126.1 bits

Bd1025 ABC-type transport system involved in gliding motility (NCBI) from Bdellovibrio bacteriovorus HD100
Aligns to 94:322 / 511 (44.8%), covers 99.3% of PF09822, 116.7 bits

Q7UXL8 Probable permease of ABC transporter from Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1)
Aligns to 351:611 / 990 (26.4%), covers 87.3% of PF09822, 108.4 bits

LIC13314 conserved hypothetical protein (NCBI) from Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Aligns to 174:434 / 675 (38.7%), covers 86.5% of PF09822, 65.3 bits

IFT52_HUMAN / Q9Y366 Intraflagellar transport protein 52 homolog; Protein NGD5 homolog from Homo sapiens (Human) (see 4 papers)
NP_057088 intraflagellar transport protein 52 homolog isoform 1 from Homo sapiens
Aligns to 1:116 / 437 (26.5%), covers 41.9% of PF09822, 39.2 bits

XP_001692161 intraflagellar transport protein IFT52 from Chlamydomonas reinhardtii
Aligns to 5:119 / 454 (25.3%), covers 45.3% of PF09822, 38.6 bits

IFT52_MOUSE / Q62559 Intraflagellar transport protein 52 homolog; Protein NGD5 from Mus musculus (Mouse) (see 3 papers)
NP_742162 intraflagellar transport protein 52 homolog from Mus musculus
Aligns to 1:116 / 426 (27.2%), covers 41.9% of PF09822, 38.0 bits

Or search for genetic data about PF09822 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory