Family Search for PF09829 (DUF2057)

PF09829 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

VCA0026 conserved hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 24:206 / 211 (86.7%), covers 99.5% of PF09829, 182.2 bits

• A communal bacterial adhesin anchors biofilm and bystander cells to surfaces
  Absalon, PLoS pathogens 2011
  • “...hypothetical VC1523 hypothetical VC1834 hypothetical VC1853 hypothetical VC1887 hypothetical VC1894 hypothetical VC2168 hypothetical VC2517 hypothetical VCA0026 hypothetical VCA0058 conserved, hypothetical VCA0144 immunogenic protein VCA0900 hypothetical Secreted proteins identified in our analysis included those forming bacterial appendages such as the mannose-sensitive hemagglutinin type IV pilus (MshA) and...”
  • “...(Q9KS75), VC1523 (Q9KRW1), VC1834 (Q9KR13), VC1853 (Q9KQZ4), VC1887 (Q9KQW1), VC1894 (Q9KQV4), VC2168 (Q9KQ36), VC2517 (Q9KP59), VCA0026 (Y2826), VCA0058 (Q9KNA7), VCA0144 (Q9KN22), and VCA0900 (Q9KL48). Supporting Information Figure S1 Overview of proteins derived from proteomic analysis of the biofilm matrix. Percentage and absolute number of cytoplasmic and...”

HI1681 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 23:216 / 221 (87.8%), covers 99.5% of PF09829, 181.1 bits

• Antisera Against Certain Conserved Surface-Exposed Peptides of Nontypeable Haemophilus influenzae Are Protective
  Whitby, PloS one 2015
  • “...lytic murein transglycosylase A Amorphous NTHI0202 hemR HI0113 Probable TonB-dependent heme receptor -barrel NTHI1987 yccT HI1681 Conserved hypothetical protein Amorphous NTHI1957 lppC HI1655 Lipoprotein LppC Amorphous NTHI1954 spr HI1652 Lipoprotein Spr, probable murein endopeptidase Amorphous NTHI1930 HI1236m Conserved hypothetical protein -barrel NTHI1668 tdeA HI1462 Outer membrane...”
• Identification of biofilm proteins in non-typeable Haemophilus Influenzae
  Gallaher, BMC microbiology 2006
  • “...y y HI1647 1574495 1 2 4 214 H Pyridoxine biosynthesis enzyme SNZ1 y y HI1681 53732528 2 3110 S Uncharacterized BCR - y y HI1715 1574570 All 1949 F Oligoribonuclease (3'->5' exoribonuclease) Orn N Y Proteins are listed in order of the gene number in...”
• Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae
  Kolker, Nucleic acids research 2004
  • “...pattern) showed, for example, that HI0017 and HI1681 were encoded exclusively in the representatives of three gammaproteobacterial families, namely...”
  • “...HI1236 and HI1709. For two more, HI0370 and HI1681, a conserved gene neighborhood (e.g. co-expression of HI1681-like genes with methylglyoxal synthase) is...”

NTHI1987 hypothetical protein (RefSeq) from Haemophilus influenzae 86-028NP
Aligns to 23:216 / 221 (87.8%), covers 99.5% of PF09829, 179.8 bits

• Antisera Against Certain Conserved Surface-Exposed Peptides of Nontypeable Haemophilus influenzae Are Protective
  Whitby, PloS one 2015
  • “...HI0117 Membrane-bound lytic murein transglycosylase A Amorphous NTHI0202 hemR HI0113 Probable TonB-dependent heme receptor -barrel NTHI1987 yccT HI1681 Conserved hypothetical protein Amorphous NTHI1957 lppC HI1655 Lipoprotein LppC Amorphous NTHI1954 spr HI1652 Lipoprotein Spr, probable murein endopeptidase Amorphous NTHI1930 HI1236m Conserved hypothetical protein -barrel NTHI1668 tdeA HI1462...”

VC1853 conserved hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Q9KQZ4 UPF0319 protein VC_1853 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Aligns to 24:219 / 224 (87.5%), covers 99.5% of PF09829, 171.0 bits

• A communal bacterial adhesin anchors biofilm and bystander cells to surfaces
  Absalon, PLoS pathogens 2011
  • “...protein VC0483 hypothetical VC1101 hypothetical VC1154 hypothetical VC1334 hypothetical VC1384 hypothetical VC1523 hypothetical VC1834 hypothetical VC1853 hypothetical VC1887 hypothetical VC1894 hypothetical VC2168 hypothetical VC2517 hypothetical VCA0026 hypothetical VCA0058 conserved, hypothetical VCA0144 immunogenic protein VCA0900 hypothetical Secreted proteins identified in our analysis included those forming bacterial appendages...”
  • “...(Q9KUT5), VC0483 (Q9KUN2), VC1101 (Q9KT04), VC1154 (Q9KSV2), VC1334 (Q9KSC4), VC1384 (Q9KS75), VC1523 (Q9KRW1), VC1834 (Q9KR13), VC1853 (Q9KQZ4), VC1887 (Q9KQW1), VC1894 (Q9KQV4), VC2168 (Q9KQ36), VC2517 (Q9KP59), VCA0026 (Y2826), VCA0058 (Q9KNA7), VCA0144 (Q9KN22), and VCA0900 (Q9KL48). Supporting Information Figure S1 Overview of proteins derived from proteomic analysis of...”
• Transcriptional profiling of Vibrio cholerae recovered directly from patient specimens during early and late stages of human infection
  Larocque, Infection and immunity 2005
  • “...HUMAN INFECTION 4491 cholerae large chromosome from VC1832 to VC1853 (P 1.5 1017). Many of these genes are transcribed in the same direction, suggesting that...”
• A communal bacterial adhesin anchors biofilm and bystander cells to surfaces
  Absalon, PLoS pathogens 2011
  • “...VC0483 (Q9KUN2), VC1101 (Q9KT04), VC1154 (Q9KSV2), VC1334 (Q9KSC4), VC1384 (Q9KS75), VC1523 (Q9KRW1), VC1834 (Q9KR13), VC1853 (Q9KQZ4), VC1887 (Q9KQW1), VC1894 (Q9KQV4), VC2168 (Q9KQ36), VC2517 (Q9KP59), VCA0026 (Y2826), VCA0058 (Q9KNA7), VCA0144 (Q9KN22), and VCA0900 (Q9KL48). Supporting Information Figure S1 Overview of proteins derived from proteomic analysis of the...”

NJ56_16705 DUF2057 family protein from Yersinia ruckeri
Aligns to 23:222 / 229 (87.3%), covers 100.0% of PF09829, 166.1 bits

• Genome Sequence of the Fish Pathogen Yersinia ruckeri SC09 Provides Insights into Niche Adaptation and Pathogenic Mechanism
  Liu, International journal of molecular sciences 2016
  • “...-32 and E , the alternative sigma factors, encoded by rpoH and rpoE (NJ56_00980 and NJ56_16705), appear to be responsible for the heat-shock response. The heat-shock response is specifically induced by a range of so-called heat-shock proteins (HSPs) as a result of a rapid increase in...”
  • “...polymerase factor -54 NJ56_14270 fliZ Flagellar biosynthesis protein FliZ NJ56_14275 fliA Flagellar biosynthesis factor -28 NJ56_16705 rpoE RNA polymerase factor -24 ( E ) Anti-sigma factor NJ56_01355 rsd Anti-RNA polymerase 70 factor NJ56_04135 raiA -54 modulation protein NJ56_05160 rsbV Anti-anti- regulatory factor NJ56_14465 flgM Anti- 28...”

YccT / b0964 DUF2057 domain-containing protein YccT from Escherichia coli K-12 substr. MG1655 (see 3 papers)
yccT / ECOCYC|G6498-MONOMER UPF0319 protein yccT from Escherichia coli K12 (see paper)
ECs1048 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
b0964 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
c1101 Hypothetical protein yccT precursor (NCBI ptt file) from Escherichia coli CFT073
S1032 hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
Aligns to 22:213 / 220 (87.3%), covers 100.0% of PF09829, 158.5 bits

• Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
  Bergholz, BMC microbiology 2007
  • “...pncB -2.37 1 ECs0390 codA -2.78 1 ECs1022 ycbR -3.16 1 ECs0415 afuA 5.21 2 ECs1048 - 2.44 2 ECs0434 psiF 3.83 2 ECs1050 yccV 3.88 2 ECs0458 yajC -2.33 1 ECs1158 agp 3.47 2 ECs0459 secD -2.40 1 ECs1159 yccJ 2.12 2 ECs0490 tig -2.96...”
• In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements
  Maciag, Nucleic acids research 2011
  • “...). S -dependent in biofilm-growing cells ( 18 ) Unknown and miscellaneous functions yccT Unknown b0964 1.51 Induced in stationary phase ( 76 ) yffP Predicted protein, prophage b2447 1.52 yidK Putative membrane transporter b3679 1.53 ynfD Predicted protein b1586 1.54 yfiL Putative lipoprotein b2602 1.55...”
• The Escherichia coli regulator of sigma 70 protein, Rsd, can up-regulate some stress-dependent promoters by sequestering sigma 70
  Mitchell, Journal of bacteriology 2007
  • “...expression (see Materials and Methods), i.e., ybaS, rmf, b0964, xasA, gadA, gadB, sufS, yhiM, hdeB, hdeA, yhiE, yhiU, yiiE, mopB, and pyrL. These include...”
• Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
  Smulski, Journal of bacteriology 2001
  • “...b0753 b0786 b0789 b0790 b0800 b0806 b0836 b0865 b0897 b0964 b0966 b1003 b1045 b1050 b1060 b1103 b1104 b1105 b1107 b1108 b1111 b1112 b1128 b1145 b1168 b1178...”
• ALDOA maintains NLRP3 inflammasome activation by controlling AMPK activation
  Bai, Autophagy 2022 (secret)
• Effective inhibition of herpes simplex virus 1 gene expression and growth by engineered RNase P ribozyme
  Trang, Nucleic acids research 2001
  • “...Sciences Inc. (Indianapolis, IN). The anti-mouse monoclonal antibodies c1101, c1113 and c1123, which react with HSV-1 proteins ICP4, ICP27 and gB, respectively,...”
• Addendum
  , Open forum infectious diseases 2019

SEN0942 putative secreted protein (RefSeq) from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
STY1099 putative secreted protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 22:213 / 220 (87.3%), covers 100.0% of PF09829, 151.4 bits

• Transcriptional Profiling and Molecular Characterization of the yccT Mutant Link: A Novel STY1099 Protein with the Peroxide Stress Response and Cell Division of Salmonellaenterica Serovar Enteritidis.
  Vidovic, Biology 2019
  • “...Unknown SEN0167 SEN0167 Hypothetical protein 4.75 0.0274 SEN0271 SEN0271 Hypothetical protein 2.33 0.0306 yycT 2 SEN0942 STY1099 1525.68 9.0780 10 56 SEN1163 SEN1163 Phage membrane protein 8.98 0.0008 SEN0541 SEN0541 Protein of unknown function DUF1471 2.31 0.0274 1 False discovery rate (FDR) p < 0.05; 2...”
• Transcriptional Profiling and Molecular Characterization of the yccT Mutant Link: A Novel STY1099 Protein with the Peroxide Stress Response and Cell Division of Salmonellaenterica Serovar Enteritidis.
  Vidovic, Biology 2019
  • “...10.3390/biology8040086 biology-08-00086 Article Transcriptional Profiling and Molecular Characterization of the yccT Mutant Link: A Novel STY1099 Protein with the Peroxide Stress Response and Cell Division of Salmonella enterica Serovar Enteritidis Vidovic Sinisa 1 * Liu Xiaoying 1 An Ran 1 Mendoza Kristelle M. 1 https://orcid.org/0000-0002-9074-4307 Abrahante...”
  • “...and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/ ). Uncharacterized protein STY1099, encoded by the yccT gene, was previously identified as the most altered (i.e., upregulated) protein among the ZnO nanoparticle (NP) stimulon of Salmonella enterica serovar Enteritidis. Here we combined various...”
• ZnO nanoparticles impose a panmetabolic toxic effect along with strong necrosis, inducing activation of the envelope stress response in Salmonella enterica serovar Enteritidis
  Vidovic, Antimicrobial agents and chemotherapy 2015
  • “...chaperones (GroEL and CspC), and a hypothetical protein (STY1099, YccT) (Table 2). Among the ZnO response stimulons, hypothetical protein STY1099 exhibited the...”
  • “...protein-protein interaction network) of the most upregulated protein, STY1099, with a high confidence score (0.70). On the basis of co-occurrence evidence (Fig....”

SC1029 putative periplasmic protein (NCBI) from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 22:213 / 220 (87.3%), covers 100.0% of PF09829, 151.4 bits

• A new class of Caulobacter crescentus flagellar genes
  Leclerc, Journal of bacteriology 1998
  • “...CB15 LS107 LS2195 PC7070 SC175 SC229 SC278 SC305 SC1029 SC1030 SC1032 SC1055 SC1066 SC1117 SC1127 SC1128 SC1132 SC1134 SC1135 SC2663 SC3090 SC3809 SC3898 SC3899...”
  • “...Flagellar mutation (class) flmA::cat flmC::cat flmE::cat flmG::cat SC1029 SC1032 SC1055 SC1066 SC1132 SC2663 SC3809 SC1117 SC1134 SC1135 SC1128 flhB (II) flbD...”
• A mutation that uncouples flagellum assembly from transcription alters the temporal pattern of flagellar gene expression in Caulobacter crescentus
  Mangan, Journal of bacteriology 1995
  • “...Berkeley E. coli S17-1 C. crescentus NA1000bla SC508 SC1029 SC1032 SC1042 SC1048 SC1055 SC1088 SC1131 SC1132 UC900 UC1010 UC1020 UC1030 UC1040 UC1041 UC1042...”
  • “...2). We also tested two other nonmotile Tn5 mutants, SC1029, which has an insertion in a gene required for polar organelle development (podW) (62), and UC2113, a...”

VV1_2115 hypothetical protein (NCBI) from Vibrio vulnificus CMCP6
Aligns to 24:202 / 207 (86.5%), covers 96.4% of PF09829, 118.1 bits

• Whole-genome comparison between reference sequences and oyster Vibrio vulnificus C-genotype strains
  Guerrero, PloS one 2019
  • “...VVMO6_03282 + - VVA0393 + - VV1_2114 - - VVMO6_03283 + - VVA0395 + - VV1_2115 - - VVMO6_03523 + - VVA0419 + + VV1_2158 + + VVMO6_03524 + - VVA0420 + + VV1_2183 - - VVMO6_03525 + - VVA0421 + + VV1_2184 - - VVMO6_03526...”
• SOLiD sequencing of four Vibrio vulnificus genomes enables comparative genomic analysis and identification of candidate clade-specific virulence genes
  Gulig, BMC genomics 2010
  • “...- VV1_2061 GGDEF family protein OMPH_PHOPR porin-like protein H - COG2199T VV1_2114 precursor - COG3203M VV1_2115 hypothetical protein VV1_2115 - COG3110S VV1_2158 methyl-accepting chemotaxis protein - COG0840NT VV1_2183 hypothetical protein VV1_2183 - COG2378K VV1_2184 ATPase involved in DNA repair - COG0419L VV1_2228 GGDEF family protein -...”

A1S_1928 putative signal peptide (RefSeq) from Acinetobacter baumannii ATCC 17978
Aligns to 1:183 / 189 (96.8%), covers 93.2% of PF09829, 94.2 bits

• Light Regulates Acinetobacter baumannii Chromosomal and pAB3 Plasmid Genes at 37°C
  Squire, Journal of bacteriology 2022 (secret)
• Acinetobacter baumannii OxyR Regulates the Transcriptional Response to Hydrogen Peroxide.
  Juttukonda, Infection and immunity 2019
  • “...A1S_3114 A1S_1677 A1S_3381 A1S_0465 A1S_1963 A1S_0464 A1S_1928 A1S_2473 A1S_1224 A1S_0416 A1S_3326 A1S_1438 A1S_3375 A1S_1539 A1S_1767 A1S_1503 A1S_3360...”

Pcryo_1853 hypothetical protein (NCBI) from Psychrobacter cryohalolentis K5
Aligns to 32:230 / 233 (85.4%), covers 100.0% of PF09829, 92.8 bits

• Identification of in vivo HSP90-interacting proteins reveals modularity of HSP90 complexes is dependent on the environment in psychrophilic bacteria
  García-Descalzo, Cell stress & chaperones 2011
  • “...SCoA succinyl-CoA synthetase, ADH alcohol dehydrogenase GroES-like protein, S3 ribosomal protein S3, Pcryo hypothetical protein Pcryo_1853, TerD probable tellurium resistance TerD, L3 ribosomal protein L3, IF3 translation initiation factor IF3, LysM peptidoglycan-binding LysM, S11 30S ribosomal protein S11, L27 50S ribosomal protein L27, HTPG high temperature...”

Or search for genetic data about PF09829 in the Fitness Browser