Family Search for PF09829 (DUF2057)
Running HMMer for PF09829
PF09829 hits 14 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
PmCQ2_002915 DUF2057 domain-containing protein from Pasteurella multocida
Aligns to 23:213 / 218 (87.6%), covers 99.5% of PF09829, 197.3 bits
- Attenuated vaccine PmCQ2Δ4555-4580 effectively protects mice against Pasteurella multocida infection
He, BMC veterinary research 2024 - “...encodes an uncharacterized oxidoreductase; PmCQ2_008725, PmCQ2_003710, PmCQ2_008190, and PmCQ2_008725 encode uncharacterized proteins; PmCQ2_000440, PmCQ2_000455, and PmCQ2_002915 encode hypothetical proteins. Notably, the subunit vaccines prepared by these 12 proteins all have immune protective effects, protective efficacy of PmCQ2_008205, PmCQ2_010435, PmCQ2_008190, and PmCQ2_004170 are relatively high (30-50%), but...”
Q9KND9 UPF0319 protein VC_A0026 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
VCA0026 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 24:206 / 211 (86.7%), covers 99.5% of PF09829, 191.1 bits
- Comprehensive in silico analyses of fifty-one uncharacterized proteins from Vibrio cholerae
Basu, PloS one 2024 - “...significantly downregulated in cgtA knockdown strain of V . cholerae M. mRNA expression from VC_A0026 (Q9KND9) and N. protein expression of Q9KND9 were downregulated in CgtA depleted condition in V . cholerae O. mRNA production from VC_1150 (UniProt ID-Q9KSV6) and P. protein expression of Q9KSV6 were...”
- “...of the proteomic and transcriptomic data for 9 proteins- Q9KND3, Q9KNF4, Q9KLQ3, Q9KPP0, Q9KRM9, Q9KKL8, Q9KND9, Q9KSV6, and Q9KNG0 whose expression was altered at mRNA and protein level, when cgtA was knocked down. Fig 2A2I show the genes and their products that were downregulated in V...”
- A communal bacterial adhesin anchors biofilm and bystander cells to surfaces
Absalon, PLoS pathogens 2011 - “...hypothetical VC1523 hypothetical VC1834 hypothetical VC1853 hypothetical VC1887 hypothetical VC1894 hypothetical VC2168 hypothetical VC2517 hypothetical VCA0026 hypothetical VCA0058 conserved, hypothetical VCA0144 immunogenic protein VCA0900 hypothetical Secreted proteins identified in our analysis included those forming bacterial appendages such as the mannose-sensitive hemagglutinin type IV pilus (MshA) and...”
- “...(Q9KS75), VC1523 (Q9KRW1), VC1834 (Q9KR13), VC1853 (Q9KQZ4), VC1887 (Q9KQW1), VC1894 (Q9KQV4), VC2168 (Q9KQ36), VC2517 (Q9KP59), VCA0026 (Y2826), VCA0058 (Q9KNA7), VCA0144 (Q9KN22), and VCA0900 (Q9KL48). Supporting Information Figure S1 Overview of proteins derived from proteomic analysis of the biofilm matrix. Percentage and absolute number of cytoplasmic and...”
HI1681 conserved hypothetical protein from Haemophilus influenzae Rd KW20
Aligns to 23:216 / 221 (87.8%), covers 99.5% of PF09829, 183.8 bits
NTHI1987 hypothetical protein from Haemophilus influenzae 86-028NP
Aligns to 23:216 / 221 (87.8%), covers 99.5% of PF09829, 182.6 bits
HSM_0266 hypothetical protein from Haemophilus somnus 2336
HSM_0266 DUF2057 domain-containing protein from Histophilus somni 2336
Aligns to 23:212 / 217 (87.6%), covers 99.5% of PF09829, 181.3 bits
VC1853 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Q9KQZ4 UPF0319 protein VC_1853 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Aligns to 24:219 / 224 (87.5%), covers 99.5% of PF09829, 174.9 bits
- A communal bacterial adhesin anchors biofilm and bystander cells to surfaces
Absalon, PLoS pathogens 2011 - “...protein VC0483 hypothetical VC1101 hypothetical VC1154 hypothetical VC1334 hypothetical VC1384 hypothetical VC1523 hypothetical VC1834 hypothetical VC1853 hypothetical VC1887 hypothetical VC1894 hypothetical VC2168 hypothetical VC2517 hypothetical VCA0026 hypothetical VCA0058 conserved, hypothetical VCA0144 immunogenic protein VCA0900 hypothetical Secreted proteins identified in our analysis included those forming bacterial appendages...”
- “...(Q9KUT5), VC0483 (Q9KUN2), VC1101 (Q9KT04), VC1154 (Q9KSV2), VC1334 (Q9KSC4), VC1384 (Q9KS75), VC1523 (Q9KRW1), VC1834 (Q9KR13), VC1853 (Q9KQZ4), VC1887 (Q9KQW1), VC1894 (Q9KQV4), VC2168 (Q9KQ36), VC2517 (Q9KP59), VCA0026 (Y2826), VCA0058 (Q9KNA7), VCA0144 (Q9KN22), and VCA0900 (Q9KL48). Supporting Information Figure S1 Overview of proteins derived from proteomic analysis of...”
- Transcriptional profiling of Vibrio cholerae recovered directly from patient specimens during early and late stages of human infection
Larocque, Infection and immunity 2005 - “...HUMAN INFECTION 4491 cholerae large chromosome from VC1832 to VC1853 (P 1.5 1017). Many of these genes are transcribed in the same direction, suggesting that...”
- A communal bacterial adhesin anchors biofilm and bystander cells to surfaces
Absalon, PLoS pathogens 2011 - “...VC0483 (Q9KUN2), VC1101 (Q9KT04), VC1154 (Q9KSV2), VC1334 (Q9KSC4), VC1384 (Q9KS75), VC1523 (Q9KRW1), VC1834 (Q9KR13), VC1853 (Q9KQZ4), VC1887 (Q9KQW1), VC1894 (Q9KQV4), VC2168 (Q9KQ36), VC2517 (Q9KP59), VCA0026 (Y2826), VCA0058 (Q9KNA7), VCA0144 (Q9KN22), and VCA0900 (Q9KL48). Supporting Information Figure S1 Overview of proteins derived from proteomic analysis of the...”
NJ56_16705 DUF2057 family protein from Yersinia ruckeri
Aligns to 23:222 / 229 (87.3%), covers 100.0% of PF09829, 163.8 bits
- Genome Sequence of the Fish Pathogen Yersinia ruckeri SC09 Provides Insights into Niche Adaptation and Pathogenic Mechanism
Liu, International journal of molecular sciences 2016 - “...-32 and E , the alternative sigma factors, encoded by rpoH and rpoE (NJ56_00980 and NJ56_16705), appear to be responsible for the heat-shock response. The heat-shock response is specifically induced by a range of so-called heat-shock proteins (HSPs) as a result of a rapid increase in...”
- “...polymerase factor -54 NJ56_14270 fliZ Flagellar biosynthesis protein FliZ NJ56_14275 fliA Flagellar biosynthesis factor -28 NJ56_16705 rpoE RNA polymerase factor -24 ( E ) Anti-sigma factor NJ56_01355 rsd Anti-RNA polymerase 70 factor NJ56_04135 raiA -54 modulation protein NJ56_05160 rsbV Anti-anti- regulatory factor NJ56_14465 flgM Anti- 28...”
YccT / b0964 DUF2057 domain-containing protein YccT from Escherichia coli K-12 substr. MG1655 (see 3 papers)
yccT / ECOCYC|G6498-MONOMER UPF0319 protein yccT from Escherichia coli K12 (see paper)
c1101 Hypothetical protein yccT precursor from Escherichia coli CFT073
b0964 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
S1032 hypothetical protein from Shigella flexneri 2a str. 2457T
ECs1048 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 22:213 / 220 (87.3%), covers 100.0% of PF09829, 163.3 bits
- Two PYRIDOXAL PHOSPHATE HOMEOSTASIS PROTEINs are essential for management of the coenzyme in plants
Farkas, 2024 - MicroRNA control of the myogenic cell transcriptome and proteome: the role of miR-16
Lim, American journal of physiology. Cell physiology 2023 (secret) - ALDOA maintains NLRP3 inflammasome activation by controlling AMPK activation
Bai, Autophagy 2022 (secret) - Effective inhibition of herpes simplex virus 1 gene expression and growth by engineered RNase P ribozyme
Trang, Nucleic acids research 2001 - “...Sciences Inc. (Indianapolis, IN). The anti-mouse monoclonal antibodies c1101, c1113 and c1123, which react with HSV-1 proteins ICP4, ICP27 and gB, respectively,...”
- In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements
Maciag, Nucleic acids research 2011 - “...). S -dependent in biofilm-growing cells ( 18 ) Unknown and miscellaneous functions yccT Unknown b0964 1.51 Induced in stationary phase ( 76 ) yffP Predicted protein, prophage b2447 1.52 yidK Putative membrane transporter b3679 1.53 ynfD Predicted protein b1586 1.54 yfiL Putative lipoprotein b2602 1.55...”
- The Escherichia coli regulator of sigma 70 protein, Rsd, can up-regulate some stress-dependent promoters by sequestering sigma 70
Mitchell, Journal of bacteriology 2007 - “...expression (see Materials and Methods), i.e., ybaS, rmf, b0964, xasA, gadA, gadB, sufS, yhiM, hdeB, hdeA, yhiE, yhiU, yiiE, mopB, and pyrL. These include...”
- Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
Smulski, Journal of bacteriology 2001 - “...b0753 b0786 b0789 b0790 b0800 b0806 b0836 b0865 b0897 b0964 b0966 b1003 b1045 b1050 b1060 b1103 b1104 b1105 b1107 b1108 b1111 b1112 b1128 b1145 b1168 b1178...”
- Addendum
, Open forum infectious diseases 2019 - Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
Bergholz, BMC microbiology 2007 - “...pncB -2.37 1 ECs0390 codA -2.78 1 ECs1022 ycbR -3.16 1 ECs0415 afuA 5.21 2 ECs1048 - 2.44 2 ECs0434 psiF 3.83 2 ECs1050 yccV 3.88 2 ECs0458 yajC -2.33 1 ECs1158 agp 3.47 2 ECs0459 secD -2.40 1 ECs1159 yccJ 2.12 2 ECs0490 tig -2.96...”
STY1099 putative secreted protein from Salmonella enterica subsp. enterica serovar Typhi str. CT18
SEN0942 putative secreted protein from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 22:213 / 220 (87.3%), covers 100.0% of PF09829, 153.5 bits
- CsgI (YccT) Is a Novel Inhibitor of Curli Fimbriae Formation in Escherichia coli Preventing CsgA Polymerization and Curli Gene Expression
Sano, International journal of molecular sciences 2023 - “...may have a signal peptide at the N-terminus and be transported to the periplasmic region. STY1099, a Salmonella YccT ortholog, is reportedly involved in nitrate reductase activity, oxidoreductase activity, cellular uptake, and stress response and it plays a role in redox homeostasis under peroxide stress conditions...”
- “...A.K. Reed K.M. Transcriptional profiling and molecular characterization of the yccT mutant link: A novel STY1099 Protein with the peroxide stress response and cell division of Salmonella enterica serovar enteritidis Biology 2019 8 86 10.3390/biology8040086 31766267 38. Serra D.O. Richter A.M. Hengge R. Cellulose as an...”
- Transcriptional Profiling and Molecular Characterization of the yccT Mutant Link: A Novel STY1099 Protein with the Peroxide Stress Response and Cell Division of Salmonella enterica Serovar Enteritidis
Vidovic, Biology 2019 - “...10.3390/biology8040086 biology-08-00086 Article Transcriptional Profiling and Molecular Characterization of the yccT Mutant Link: A Novel STY1099 Protein with the Peroxide Stress Response and Cell Division of Salmonella enterica Serovar Enteritidis Vidovic Sinisa 1 * Liu Xiaoying 1 An Ran 1 Mendoza Kristelle M. 1 https://orcid.org/0000-0002-9074-4307 Abrahante...”
- “...and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/ ). Uncharacterized protein STY1099, encoded by the yccT gene, was previously identified as the most altered (i.e., upregulated) protein among the ZnO nanoparticle (NP) stimulon of Salmonella enterica serovar Enteritidis. Here we combined various...”
- ZnO nanoparticles impose a panmetabolic toxic effect along with strong necrosis, inducing activation of the envelope stress response in Salmonella enterica serovar Enteritidis
Vidovic, Antimicrobial agents and chemotherapy 2015 - “...chaperones (GroEL and CspC), and a hypothetical protein (STY1099, YccT) (Table 2). Among the ZnO response stimulons, hypothetical protein STY1099 exhibited the...”
- “...protein-protein interaction network) of the most upregulated protein, STY1099, with a high confidence score (0.70). On the basis of co-occurrence evidence (Fig....”
- Transcriptional Profiling and Molecular Characterization of the yccT Mutant Link: A Novel STY1099 Protein with the Peroxide Stress Response and Cell Division of Salmonella enterica Serovar Enteritidis
Vidovic, Biology 2019 - “...Unknown SEN0167 SEN0167 Hypothetical protein 4.75 0.0274 SEN0271 SEN0271 Hypothetical protein 2.33 0.0306 yycT 2 SEN0942 STY1099 1525.68 9.0780 10 56 SEN1163 SEN1163 Phage membrane protein 8.98 0.0008 SEN0541 SEN0541 Protein of unknown function DUF1471 2.31 0.0274 1 False discovery rate (FDR) p < 0.05; 2...”
SC1029 putative periplasmic protein from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 22:213 / 220 (87.3%), covers 100.0% of PF09829, 153.5 bits
VV1_2115 hypothetical protein from Vibrio vulnificus CMCP6
Aligns to 23:202 / 207 (87.0%), covers 96.9% of PF09829, 123.2 bits
ECB94_12780 DUF2057 domain-containing protein from Vibrio mediterranei
Aligns to 23:202 / 209 (86.1%), covers 100.0% of PF09829, 114.3 bits
A1S_1928 putative signal peptide from Acinetobacter baumannii ATCC 17978
Aligns to 1:183 / 189 (96.8%), covers 93.2% of PF09829, 95.3 bits
Pcryo_1853 hypothetical protein from Psychrobacter cryohalolentis K5
Aligns to 32:230 / 233 (85.4%), covers 100.0% of PF09829, 94.8 bits
- Identification of in vivo HSP90-interacting proteins reveals modularity of HSP90 complexes is dependent on the environment in psychrophilic bacteria
García-Descalzo, Cell stress & chaperones 2011 - “...SCoA succinyl-CoA synthetase, ADH alcohol dehydrogenase GroES-like protein, S3 ribosomal protein S3, Pcryo hypothetical protein Pcryo_1853, TerD probable tellurium resistance TerD, L3 ribosomal protein L3, IF3 translation initiation factor IF3, LysM peptidoglycan-binding LysM, S11 30S ribosomal protein S11, L27 50S ribosomal protein L27, HTPG high temperature...”
Or search for genetic data about PF09829 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory