Family Search for PF09831 (DUF2058)

PF09831.9 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PA0937 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 4:179 / 179 (98.3%), covers 100.0% of PF09831, 207.2 bits

• The novel two-component regulatory system BfiSR regulates biofilm development by controlling the small RNA rsmZ through CafA
  Petrova, Journal of bacteriology 2010
  • “...sites were three located upstream of hypothetical genes (PA0937, PA1393, and PA2224), as well as three upstream of genes encoding proteins involved in...”
• Lipopolysaccharide O-antigen chain length regulation in Pseudomonas aeruginosa serogroup O11 strain PA103
  Kintz, Journal of bacteriology 2008
  • “...HindIII Wzz2 Ext Rv CATGAATTCGAAGAACTGCGGCAGATAGG EcoRI PA0937 Fd AAGCTGGAAAGCGACGACTA PA0939 Rv CATGCCATCTTCACACCTTG a Creating pEX18-wzz1 Creating pEX18-wzz1...”
  • “...of the area surrounding the proposed wzz2 gene, using primers PA0937 Fd and PA0939 Rv (Table 2), indicated that this gene was in the same region of the genome...”

YaiL / b0354 DUF2058 domain-containing protein YaiL from Escherichia coli K-12 substr. MG1655 (see paper)
b0354 nucleoprotein/polynucleotide-associated enzyme (VIMSS) from Escherichia coli str. K-12 substr. MG1655
UTI89_C0374 hypothetical protein (NCBI) from Escherichia coli UTI89
Aligns to 5:179 / 179 (97.8%), covers 100.0% of PF09831, 204.4 bits

• Transcriptional profile of the Escherichia coli response to the antimicrobial insect peptide cecropin A
  Hong, Antimicrobial agents and chemotherapy 2003
  • “...(L v C) dr dc yacH (b0117) mbhA (b0230) yaiL (b0354) acrB (b0462) ylcD (b0574) entE (b0594) ybfC (b0704) rh1E (b0797) ybiA (b0798) ybiX (b0804) -- (b0817) --...”
• Interfering with different steps of protein synthesis explored by transcriptional profiling of Escherichia coli K-12
  Sabina, Journal of bacteriology 2003
  • “...uhpC b2451 rpsU rpmJ wbbJ rplO b1593 gapC_2 dadA b0354 b3857 b2034 b2003 b1983 b4185 b4202 b3845 b2447 b3298 b1601 b2272 b4200 b3313 b3057 b0580 b3312 b0833...”
• DFI-seq identification of environment-specific gene expression in uropathogenic Escherichia coli
  Madelung, BMC microbiology 2017
  • “...acid-CoA ligase; O-succinylbenzoate synthase; naphthoate synthase 3 1.731787 galS DNA-binding transcriptional regulator GalS 1 1.715122 UTI89_C0374 Hypothetical protein (nucleoprotein/polynucleotide-associated enzyme) 1 1.701595 fadB multifunctional fatty acid oxidation complex subunit alpha 1 1.682517 ampD ; ampE N-acetyl-anhydromuranmyl-L-alanine amidase; regulatory protein AmpE 2 1.671218 narG ; narH; narJ;...”

Z0454 nucleoprotein/polynucleotide-associated enzyme (RefSeq) from Escherichia coli O157:H7 EDL933
Aligns to 5:179 / 179 (97.8%), covers 100.0% of PF09831, 202.0 bits

• Pyelonephritis in slaughter pigs and sows: morphological characterization and aspects of pathogenesis and aetiology
  Isling, Acta veterinaria Scandinavica 2010
  • “...according to the manufacturers' instructions. c A three layer horseradish PAP (peroxidase anti-peroxidase) technique using Z0454 (Dakocytomation, Denmark) (1:200 in TBS, 30 min RT) and P1901 (Sigma-Aldrich A/s, Denmark) (1:100 in TBS, 30 min RT). d Donkey Anti-Sheep/Goat immunoglobulins (peroxidase conjugate) (AP360, The Binding Site Ltd,...”

STM4192 putative cytoplasmic protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 5:179 / 179 (97.8%), covers 100.0% of PF09831, 196.5 bits

• The GATC-binding protein SeqA is required for bile resistance and virulence in Salmonella enterica serovar typhimurium
  Prieto, Journal of bacteriology 2007
  • “...STM2609 yeaR ygiN menF STM2743 STM1671 STM4493 chaB yijP STM4192 deoA yidE avrA sbcC ybeU STM4493 glgP STM4015 adi yeeY narJ SeqA mutant/ wild-type expression...”

YPK_2500 hypothetical protein (RefSeq) from Yersinia pseudotuberculosis YPIII
Aligns to 5:179 / 179 (97.8%), covers 100.0% of PF09831, 195.3 bits

• The main virulence determinant of Yersinia entomophaga MH96 is a broad-host-range toxin complex active against insects
  Hurst, Journal of bacteriology 2011
  • “...GGDEF domain 91/94//179 (1-179), hypothetical protein YPK_2500 (179) 90/93//232 (1-232), pseudouridylate synthases, 23S RNA-specific COG0564 (232) 97%b...”

XOO3803 hypothetical protein (NCBI) from Xanthomonas oryzae pv. oryzae KACC10331
Aligns to 4:181 / 181 (98.3%), covers 100.0% of PF09831, 186.7 bits

• Identification of phenolic compounds that suppress the virulence of Xanthomonas oryzae on rice via the type III secretion system
  Fan, Molecular plant pathology 2017 (secret)
• Effects on promoter activity of base substitutions in the cis-acting regulatory element of HrpXo regulons in Xanthomonas oryzae pv. oryzae
  Tsuge, Journal of bacteriology 2005
  • “...mutant (Fig. 3). These ORFs corresponded to XOO0804 and XOO3803, respectively, in the genomic database of X. oryzae pv. oryzae (Ochiai et al., unpublished). A...”
  • “...with a BLAST program (2) revealed that XOO0804 and XOO3803 are homologous to XAC1124 (88%) and XAC0601 (91%) in X. axonopodis pv. citri (8), but they have...”

YPO1575 hypothetical protein (RefSeq) from Yersinia pestis CO92
Aligns to 1:170 / 170 (100.0%), covers 97.1% of PF09831, 184.7 bits

• Inhibition of Yersinia pestis DNA adenine methyltransferase in vitro by a stibonic acid compound: identification of a potential novel class of antimicrobial agents
  McKelvie, British journal of pharmacology 2013
  • “...1.60 pyrG CTP synthase 3.83E-02 1.07E-03 1.60 YPO1575 Conserved hypothetical protein 4.97E-02 1.84E-03 1.59 ribD Riboflavin biosynthesis protein RibD 2.22E-02...”

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