Family Search for PF09838 (DUF2065)

Running HMMer for PF09838

PF09838 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

VC0351 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 11:66 / 68 (82.4%), covers 98.2% of PF09838, 78.5 bits

• Genes induced late in infection increase fitness of Vibrio cholerae after release into the environment
  Schild, Cell host & microbe 2007
  • “...28.3 28.3 ND VC0353 conserved hypothetical protein, 40 bp to VC0351 on minus strand 1.1 ND 1.2 50 47.2 42.4 ND VC0376 conserved hypothetical protein 2 ND 2.9 19...”

NJ56_04080 DUF2065 domain-containing protein from Yersinia ruckeri
Aligns to 5:60 / 66 (84.8%), covers 100.0% of PF09838, 77.5 bits

• Genome Sequence of the Fish Pathogen Yersinia ruckeri SC09 Provides Insights into Niche Adaptation and Pathogenic Mechanism
  Liu, International journal of molecular sciences 2016
  • “...and virulence. By contrast, the Sec apparatus (NJ56_00285, NJ56_03335, NJ56_03340, NJ56_00965, NJ56_04460-70, NJ56_12650, NJ56_13745, and NJ56_04080) from SC09 appears to translocate polypeptides in an unstructured state. In line with previous findings, SC09 harbors a T4SS (type IV secretion system) [ 68 ], encoded by NJ56_17270-NJ56_17375, which...”

YjeT / b4176 DUF2065 domain-containing protein YjeT from Escherichia coli K-12 substr. MG1655
b4176 conserved inner membrane protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 5:60 / 65 (86.2%), covers 100.0% of PF09838, 74.7 bits

• Global analysis of host response to induction of a latent bacteriophage
  Osterhout, BMC microbiology 2007
  • “...95% confidence. Gene Log 2 Ratio a Significance b Product yccA 1.00 4.75 e-2 Unknown b4176 0.96 7.70 e-3 Unknown proWX 0.95 2.64 e-2 Proline ABC transport system purA 0.80 4.48 e-2 Adenylosuccinate synthetase oppABC 0.77 2.93 e-2 Periplasmic binding protein b1117 0.68 4.17 e-2 Unknown...”

AKJ12_RS05625 DUF2065 family protein from Xanthomonas arboricola pv. juglandis
Aligns to 4:59 / 61 (91.8%), covers 100.0% of PF09838, 70.4 bits

• Proteome Analysis of Walnut Bacterial Blight Disease
  H, International journal of molecular sciences 2020
  • “...(AKJ12_RS09825); xylose isomerase (AKJ12_RS20500); four hydrolases (AKJ12_RS18195, AKJ12_RS14795, AKJ12_RS12205, and AKJ12_RS12930); four aminopeptidases (AKJ12_RS15095, AKJ12_RS13855, AKJ12_RS05625, and AKJ12_RS04085); and biotin carboxylase (AKJ12_RS08585). In addition, we highlighted argininosuccinate synthase (AKJ12_RS01860); lytic murein transglucosylase (AKJ12_RS06545); two copper-binding proteins located adjacent to each other in the Xaj genome; and...”

Smlt3594 putative transmembrane protein from Stenotrophomonas maltophilia K279a
Aligns to 4:59 / 61 (91.8%), covers 100.0% of PF09838, 60.5 bits

• Inactivation of SmeSyRy Two-Component Regulatory System Inversely Regulates the Expression of SmeYZ and SmeDEF Efflux Pumps in Stenotrophomonas maltophilia
  Wu, PloS one 2016
  • “...11.036 Smlt4070 SmeF (RND-type multidrug efflux pump) 10.410 Smlt4072 SmeD (RND-type multidrug efflux pump) 9.576 Smlt3594 transmembrane protein 6.115 Smlt4069 transmembrane protein 3.655 Smlt0271 hypothetical protein 3.057 Smlt2932 glutamine amidotransferase class-I 3.019 Smlt4073 SmeT 2.718 Smlt2201 SmeY(RND-type multidrug efflux pump) -19.440 Smlt2202 SmeZ (RND-type multidrug efflux...”

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