PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF09922 (LiaF-like_C)

PF09922 hits 32 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

lmo1020 similar to B. subtilis YvqF protein (NCBI ptt file) from Listeria monocytogenes EGD-e
Aligns to 122:234 / 237 (47.7%), covers 100.0% of PF09922, 130.2 bits

lin1019 similar to B. subtilis YvqF protein (NCBI ptt file) from Listeria innocua Clip11262
Aligns to 122:234 / 237 (47.7%), covers 100.0% of PF09922, 129.3 bits

EF2913 conserved hypothetical protein (NCBI ptt file) from Enterococcus faecalis V583
OG1RF_12213 cell wall-active antibiotics response protein LiaF from Enterococcus faecalis OG1RF
Aligns to 128:240 / 243 (46.5%), covers 100.0% of PF09922, 125.2 bits

SSU0386 membrane protein (RefSeq) from Streptococcus suis P1/7
Aligns to 115:228 / 231 (49.4%), covers 100.0% of PF09922, 124.7 bits

LSA1371 Hypothetical membrane protein (NCBI) from Lactobacillus sakei subsp. sakei 23K
Aligns to 137:249 / 252 (44.8%), covers 100.0% of PF09922, 122.6 bits

LIAF_BACSU / O32199 Protein LiaF from Bacillus subtilis (strain 168) (see 6 papers)
NP_391190 membrane component associated to the LiaRS two-component system from Bacillus subtilis subsp. subtilis str. 168
Aligns to 126:238 / 241 (46.9%), covers 100.0% of PF09922, 122.1 bits

SPD_0350 hypothetical protein (NCBI) from Streptococcus pneumoniae D39
spr0342 Conserved hypothetical protein (NCBI ptt file) from Streptococcus pneumoniae R6
SPV_0350 cell wall-active antibiotics response protein LiaF from Streptococcus pneumoniae
Aligns to 114:229 / 232 (50.0%), covers 100.0% of PF09922, 117.6 bits

WP_011054833 cell wall-active antibiotics response protein LiaF from Streptococcus pyogenes
SpyM3_1368 conserved hypothetical protein (NCBI ptt file) from Streptococcus pyogenes MGAS315
Aligns to 115:227 / 230 (49.1%), covers 100.0% of PF09922, 116.8 bits

SM12261_RS07670 cell wall-active antibiotics response protein LiaF from Streptococcus mitis NCTC 12261
Aligns to 114:229 / 232 (50.0%), covers 100.0% of PF09922, 115.5 bits

SP_0385 hypothetical protein (RefSeq) from Streptococcus pneumoniae TIGR4
Aligns to 114:229 / 232 (50.0%), covers 100.0% of PF09922, 115.0 bits

HSISS4_01346 cell wall-active antibiotics response protein LiaF from Streptococcus salivarius
Aligns to 115:229 / 232 (49.6%), covers 100.0% of PF09922, 110.7 bits

MW1826 conserved hypothetical protein (NCBI ptt file) from Staphylococcus aureus subsp. aureus MW2
SA1702 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus N315
SAV1886 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus Mu50
SAOUHSC_02100 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus NCTC 8325
SAUSA300_1867 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus USA300_FPR3757
NWMN_1824 hypothetical protein (RefSeq) from Staphylococcus aureus subsp. aureus str. Newman
USA300HOU_1882 hypothetical membrane protein (RefSeq) from Staphylococcus aureus subsp. aureus USA300_TCH1516
SAR1976 putative membrane protein (NCBI) from Staphylococcus aureus subsp. aureus MRSA252
SACOL1944 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus COL
Aligns to 119:230 / 233 (48.1%), covers 100.0% of PF09922, 106.6 bits

SMU_485 cell wall-active antibiotics response protein LiaF from Streptococcus mutans UA159
Aligns to 115:228 / 231 (49.4%), covers 100.0% of PF09922, 104.9 bits

SERP1424 hypothetical protein (NCBI) from Staphylococcus epidermidis RP62A
Aligns to 119:230 / 233 (48.1%), covers 100.0% of PF09922, 101.8 bits

BJK46_008080 cell wall-active antibiotics response protein LiaF from Staphylococcus pseudintermedius
Aligns to 119:230 / 233 (48.1%), covers 100.0% of PF09922, 101.6 bits

SH1069 hypothetical protein (NCBI) from Staphylococcus haemolyticus JCSC1435
Aligns to 119:230 / 233 (48.1%), covers 100.0% of PF09922, 99.6 bits

SPy1623 conserved hypothetical protein (NCBI ptt file) from Streptococcus pyogenes M1 GAS
Aligns to 132:228 / 228 (42.5%), covers 82.5% of PF09922, 97.8 bits

llmg_1650 putative secreted protein (NCBI) from Lactococcus lactis subsp. cremoris MG1363
Aligns to 81:188 / 191 (56.5%), covers 78.9% of PF09922, 59.3 bits

K7S1Q8 Cell wall-active antibiotics response LiaF-like C-terminal domain-containing protein from Acidipropionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM 6432 / NBRC 12425 / NCIMB 8070 / 4)
Aligns to 100:199 / 216 (46.3%), covers 64.9% of PF09922, 42.4 bits

Bovatus_RS21370 LiaF-related protein from Bacteroides ovatus
Aligns to 164:255 / 264 (34.8%), covers 57.0% of PF09922, 41.7 bits

Btheta7330_RS19920 LiaF-related protein from Bacteroides thetaiotaomicron
Aligns to 163:253 / 264 (34.5%), covers 58.8% of PF09922, 39.5 bits

cg0706 hypothetical protein (RefSeq) from Corynebacterium glutamicum ATCC 13032
Aligns to 249:350 / 357 (28.6%), covers 85.1% of PF09922, 36.2 bits

LBA0404 hypothetical protein (RefSeq) from Lactobacillus acidophilus NCFM
Aligns to 151:249 / 252 (39.3%), covers 63.2% of PF09922, 35.2 bits

D819_07614, SMU41_RS00715 hdrR negative regulator HdrM from Streptococcus mutans AC4446
SmuNN2025_0283 hypothetical protein (RefSeq) from Streptococcus mutans NN2025
Aligns to 127:225 / 228 (43.4%), covers 67.5% of PF09922, 31.9 bits

D816_08353, PLG01_01703, SMU102_09453, SMU107_RS01185, SMU108_RS04135, SMU40_07641, SMU57_06773, SMU68_RS09280, SMU76_RS00955, SMU80_RS03030, SMU88_00380, SMU97_RS01115 hdrR negative regulator HdrM from Streptococcus mutans N66
Aligns to 127:225 / 228 (43.4%), covers 65.8% of PF09922, 31.1 bits

SMU77_07686 hdrR negative regulator HdrM from Streptococcus mutans NV1996
Aligns to 127:225 / 228 (43.4%), covers 65.8% of PF09922, 31.1 bits

SMU89_04919 hdrR negative regulator HdrM from Streptococcus mutans NLML1
Aligns to 127:225 / 228 (43.4%), covers 65.8% of PF09922, 31.1 bits

D817_08543, SMU_1855 hdrR negative regulator HdrM from Streptococcus mutans KK21
Aligns to 127:225 / 228 (43.4%), covers 65.8% of PF09922, 31.1 bits

SMULJ23_0304 hdrR negative regulator HdrM from Streptococcus mutans LJ23
Aligns to 127:225 / 228 (43.4%), covers 65.8% of PF09922, 31.0 bits

APQ13_RS09135, D818_08143, D820_08345, D821_08319, SMU105_RS00335, SMU109_07641, SMU26_08767, SMU53_RS00305, SMU70_RS05300, SMU99_06748, SMUGS5_08355, WP_002268420 hdrR negative regulator HdrM from Streptococcus mutans GS-5
Aligns to 127:225 / 228 (43.4%), covers 65.8% of PF09922, 30.1 bits

D822_08240 LiaF-related protein from Streptococcus ratti FA-1 = DSM 20564
Aligns to 131:219 / 234 (38.0%), covers 65.8% of PF09922, 30.1 bits

SMU50_07861 hdrR negative regulator HdrM from Streptococcus mutans 5SM3
Aligns to 127:225 / 228 (43.4%), covers 65.8% of PF09922, 30.1 bits

Or search for genetic data about PF09922 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory