Family Search for PF09938 (DUF2170)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF09938 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
PA3732 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 6:143 / 147 (93.9%), covers 99.3% of PF09938, 169.9 bits
- Transcriptome analysis of Pseudomonas aeruginosa PAO1 grown at both body and elevated temperatures
Chan, PeerJ 2016 - “...1,061.23 491.469 1.11057 2.22426 0.00025 0.00268304 gene414 pilJ 13.8071 6.57893 1.06948 1.91188 0.0015 0.01202 gene3801 PA3732 230.837 111.46 1.05035 2.14155 0.0002 0.00231154 gene3598 bfrB 3,320.52 1,612.16 1.04241 2.13433 0.00035 0.00369035 gene5682 atpA 96.9071 47.1674 1.03881 2.14129 0.0004 0.00414483 gene1116 fliD 13.5333 6.6493 1.02524 1.65814 0.0066 0.0357351...”
- LTQ-XL mass spectrometry proteome analysis expands the Pseudomonas aeruginosa AmpR regulon to include cyclic di-GMP phosphodiesterases and phosphoproteins, and identifies novel open reading frames
Kumari, Journal of proteomics 2014 - “...that the putative start codon was erroneously annotated in the Pseudomonas database. One of these, PA3732, was tested by RT-PCR ( Supplementary Fig. 1 ). The new proposed coordinates for these misannotated ORFs based upon the peptides are listed in Table 5 . All the proposed...”
- “...PA2731 3090231 - 3089644 PA3248 3635589 - 3634924 C3719, PACS2, LESB58, 2192, 39016, PA14, PA7 PA3732 4183405 - 4182785 LESB58, PACS2, C3719, 39016, 2192, PA14, PA7 PA3861 4321104 - 4322627 C3719, 39016, LESB58, PA14, 2192, PACS2, PA7 PA4985 5601131 - 5599884 PACS2, C3719, 39016, PA14, LESB58,...”
- A sequence-based approach for prediction of CsrA/RsmA targets in bacteria with experimental validation in Pseudomonas aeruginosa
Kulkarni, Nucleic acids research 2014 - “..., 33 , 37 ), hcnA in P. protegens ( 35 ), PA0081, PA0082, PA0277, PA3732 in P. aeruginosa ( 34 ) and hag in B. subtilis ( 12 ) and flaB in B. burgdorferi ( 38 ). The second category consists of genes having only...”
- Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA
Brencic, Molecular microbiology 2009 - “...by RsmA directly. In the microarray analysis, transcripts encoding genes in the PA0277, PA2541 and PA3732 operons were among those that showed the highest increase in concentration in the rsmA mutant relative to the wild type ( Table 1 and S1 ). Furthermore, Mfold analysis of...”
- “...encodes a hypothetical Zn-dependent protease and is likely transcribed as a single gene. PA2541 and PA3732 are the first genes in two unrelated putative six-gene operons of unknown functions. We constructed transcriptional and P lacUV5 -driven translational lacZ fusions to PA0277, PA2541 and PA3732 genes and...”
- Identification of biofilm-associated cluster (bac) in Pseudomonas aeruginosa involved in biofilm formation and virulence
Macé, PloS one 2008 - “...Protein A (PspA). As for psp regulons, we identified a putative RpoN-binding site upstream the pA3732 gene and as PspA, PA3731 is accumulated by an osmotic shock. However, some obvious differences are observed compared to already described psp systems, e.g., this unknown cluster is monocistronic, no...”
- “...associated with pA3731 . The gene belongs to a cluster of 4 genes ( pA3729 pA3732 ) coding for unknown proteins ( Fig. 7A ). Comparison of the protein sequence of PA3731 on databases showed no homology with other proteins. However, its predicted secondary structure showed...”
CCNA_02448 hypothetical protein from Caulobacter crescentus NA1000
Aligns to 79:215 / 223 (61.4%), covers 98.5% of PF09938, 167.2 bits
- The coding and noncoding architecture of the Caulobacter crescentus genome
Schrader, PLoS genetics 2014 - “...profiling identification of an intergenic small CDS. D. Alternative translation initiation site identified in the CCNA_02448 mRNA allows translation of two in-frame protein isoforms. Internal start codon was verified by LC-MS. Revisiting the role of the Shine-Dalgarno sequence Despite a conserved 3 end of the rRNA...”
SC4246 putative cytoplasmic protein from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 2:132 / 134 (97.8%), covers 99.3% of PF09938, 157.7 bits
AEX15_17850, STMMW_43141 YjfI family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. D23580
STM4370 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 2:132 / 134 (97.8%), covers 99.3% of PF09938, 157.7 bits
SEN4136 hypothetical protein from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 2:132 / 134 (97.8%), covers 99.3% of PF09938, 157.2 bits
SeKA_A4040 DUF2170 family protein from Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Aligns to 2:132 / 134 (97.8%), covers 99.3% of PF09938, 156.6 bits
YjfI / b4181 DUF2170 domain-containing protein YjfI from Escherichia coli K-12 substr. MG1655
b4181 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 2:132 / 133 (98.5%), covers 99.3% of PF09938, 151.6 bits
WP_007955624 YjfI family protein from Pseudomonas kribbensis
Aligns to 84:221 / 222 (62.2%), covers 100.0% of PF09938, 150.4 bits
- An unclassified microorganism: novel pathogen candidate lurking in human airways
Fukuda, PloS one 2014 - “...hypothetical protein hypothetical protein {222 aa}( Pseudomonas sp. GM25) 23/81 (28%) 39/81 (48%) 37% 7.2 WP_007955624 ORF13 592 NTPase(lepA, Ras_like_GTPase) GTP-binding protein LepA {597 aa}( Desulfobulbus propionicus ) 164/605 (27%) 289/605 (47%) 97% 7.00E-54 YP_004195254 ORF14 117 50S ribosomal protein L20(Ribosomal_L20) ribosomal protein L20 {117 aa}(...”
SO3764 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 3:136 / 137 (97.8%), covers 99.3% of PF09938, 128.0 bits
Or search for genetic data about PF09938 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory