Family Search for PF09972 (DUF2207)

PF09972.9 hits 13 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

LBP_cg2385 DUF2207 domain-containing protein from Lactobacillus plantarum subsp. plantarum P-8
Aligns to 65:566 / 641 (78.3%), covers 100.0% of PF09972, 363.5 bits

• Proteomic analysis of an engineered isolate of Lactobacillus plantarum with enhanced raffinose metabolic capacity
  Wang, Scientific reports 2016
  • “...protein 1.64 LBP_cg1866 Hypothetical protein 1.54 LBP_cg1913 Hypothetical protein 1.64 LBP_cg2375 Integral membrane protein 2.6 LBP_cg2385 Integral membrane protein 1.65 LBP_cg0392 Hypothetical protein 1.79 LBP_cg0481 Extracellular zinc metalloproteinase 6.94 LBP_cg0600 Cell surface protein 2.45 LBP_cg0625 Hypothetical protein 1.53 LBP_cg0719 Hypothetical protein 1.92 LBP_cg0720 Hypothetical protein 3.17...”

SMc00852 HYPOTHETICAL TRANSMEMBRANE SIGNAL PEPTIDE PROTEIN (NCBI ptt file) from Sinorhizobium meliloti 1021
2 alignments in 26:564 / 644 (83.7%), covering up to 88.4% of PF09972, 333.1 bits

• Development of a functional genomics platform for Sinorhizobium meliloti: construction of an ORFeome
  Schroeder, Applied and environmental microbiology 2005
  • “...been cloned, and these (SMb21298, SMb21548, SMb20514, SMc00852, SMc01316, SMc01710, SMc02086, SMc02273, SMc03761, SMc04028, SMc04382, TGc2812, and TGc1901) are...”

Bbr_0375 DUF2207 domain-containing protein from Bifidobacterium breve UCC2003
Aligns to 39:628 / 751 (78.6%), covers 99.2% of PF09972, 331.9 bits

• Transposon mutagenesis in Bifidobacterium breve: construction and characterization of a Tn5 transposon mutant library for Bifidobacterium breve UCC2003
  Ruiz, PloS one 2013
  • “...fam prot) G 1719332 ccccggagg Bbr_1383 Conserv. Hypothetical protein with DUF domain H 502520 gccgacgtc Bbr_0375 Conserv. Hypothetical membrane spanning protein I 633832 cccgatgac Bbr_0482 Conserv. Hypothetical protein J 1771618 gatgaggtt - 223 nt upstream Bbr_1420 K 634533 gttcacgcg Bbr_0482 Conserv. Hypothetical protein UCC1 1167747 gataagaag...”

Balac_0325 hypothetical protein (RefSeq) from Bifidobacterium animalis subsp. lactis Bl-04
Aligns to 39:630 / 738 (80.2%), covers 99.2% of PF09972, 312.3 bits

• Genome-wide identification of small RNAs in Bifidobacterium animalis subsp. lactis KLDS 2.0603 and their regulation role in the adaption to gastrointestinal environment
  Zhu, PloS one 2015
  • “...Signal recognition particle protein cysteinyl-tRNA synthetase IGR-130 406, 166 406, 479 + 313 Hypothetical protein Balac_0325 ribonucleoside-diphosphate reductase subunit beta IGR-136 426, 611 426, 713 + 102 Response regulator of two-component system Phosphate-binding transport protein of ABC transporter system IGR-2 5, 224 5, 584 + 360...”

Spy49_0238 hypothetical protein (RefSeq) from Streptococcus pyogenes NZ131
Aligns to 27:572 / 604 (90.4%), covers 99.8% of PF09972, 265.3 bits

• Identification of novel growth phase- and media-dependent small non-coding RNAs in Streptococcus pyogenes M49 using intergenic tiling arrays
  Patenge, BMC genomics 2012
  • “...4 sRNASpy490229 238850 238899 49 + prgA rpsL b 5 sRNASpy490238 248530 248579 49 + Spy49_0238 bacA a 6 sRNASpy490241 251595 251644 49 + rgpG Spy49_0242 a 7 sRNASpy490305 318826 318910 84 + Spy49_0305 Spy49_0306 23S-methyl b 8 sRNASpy490306 319622 319776 154 + Spy49_0306 Spy49_0307 FMN...”

SP_0454 hypothetical protein (RefSeq) from Streptococcus pneumoniae TIGR4
Aligns to 27:561 / 630 (84.9%), covers 99.6% of PF09972, 256.4 bits

• Grad-seq in a Gram-positive bacterium reveals exonucleolytic sRNA activation in competence control
  Hör, The EMBO journal 2020
  • “...example, the membraneassociated, virulencerelated protein UppP (a.k.a. BacA) (Chalker etal , 2000 ) comigrated with SP_0454, a protein of unknown function with several transmembrane domains that are encoded in the same operon. While we cannot assess whether these putative membrane proteins remain properly folded, this illustrates...”

SPD_0414 hypothetical protein (NCBI) from Streptococcus pneumoniae D39
Aligns to 26:560 / 629 (85.1%), covers 99.6% of PF09972, 255.3 bits

• [ComE-deficient mutant affects in vivo-induced genes expression in Streptococcus pneumoniae]
  Liu, Wei sheng wu xue bao = Acta microbiologica Sinica 2010 (PubMed) (secret)

YPO2731 putative membrane protein (NCBI ptt file) from Yersinia pestis CO92
Aligns to 51:607 / 679 (82.0%), covers 99.8% of PF09972, 236.7 bits

• Molecular Darwinian evolution of virulence in Yersinia pestis
  Zhou, Infection and immunity 2009
• Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus
  Zhou, Journal of bacteriology 2004
  • “...pMT026 pMT056 YP1700 YP1715 YPO2258 YP2054 YPO2729 YPO2731 YPO3049 YP2435 YP2433 YP2671 YPO1986-1987 (RD1) YPO2096-2135 (RD2) YPO2469 (RD3) YPO2487-2489 (RD4)...”
  • “...YPCD1.39c, YPMT1.23c, YPMT1.25c, YPMT1.43c, YPO1956, YPO1973, YPO2729, YPO2731, and YPO3049 according to the CO92 genome annotation [Table 3]), each with a...”

YciP / b1268 DUF2207 domain-containing protein YciQ from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b1268 predicted inner membrane protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 34:574 / 631 (85.7%), covers 99.2% of PF09972, 234.0 bits

• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013

YP_002236173 hypothetical protein (RefSeq) from Klebsiella pneumoniae 342
Aligns to 50:608 / 681 (82.1%), covers 99.2% of PF09972, 233.4 bits

• Plant-bacteria association and symbiosis: are there common genomic traits in alphaproteobacteria?
  Pini, Genes 2011
  • “...YP_001178228 YP_002237662 YP_002008874 YP_002238064 2791 Phosphoesterase 2853 Electron transfer flavoprotein, beta subunit YP_001796225 2898 Unknown YP_002236173 2908 Electron transfer flavoprotein, alpha subunit YP_001796224 2912 Methyltransferase YP_935409 YP_001176000 YP_002237443 YP_001177854 YP_002239590 2927 Aminoacid aldolase or racemase YP_002007445 2981 Mg 2+ and Co 2+ transporters YP_002006900 YP_001176870 YP_002238775...”

c1733 Hypothetical protein yciQ (NCBI ptt file) from Escherichia coli CFT073
Aligns to 35:575 / 630 (85.9%), covers 99.2% of PF09972, 227.0 bits

• Mapping the ryanodine receptor FK506-binding protein subunit using fluorescence resonance energy transfer
  Cornea, The Journal of biological chemistry 2010 (secret)
• FRET-based mapping of calmodulin bound to the RyR1 Ca2+ release channel
  Cornea, Proceedings of the National Academy of Sciences of the United States of America 2009 (secret)

BLi00351 hypothetical protein (NCBI) from Bacillus licheniformis DSM 13
Aligns to 27:571 / 631 (86.4%), covers 99.0% of PF09972, 210.1 bits

• Cell envelope stress response in Bacillus licheniformis: integrating comparative genomics, transcriptional profiling, and regulon mining to decipher a complex regulatory network
  Wecke, Journal of bacteriology 2006
  • “...-- Putative ECF target genes abh Bli00351 Bli00968-yhcHI Bli01943-Bli1945 Bli02007 Bli02027 Bli02331 Bli02477-ypuD Bli02851 Bli04079-dltABCD Bli04206 lytR pbpE...”

Z2542 No description from Escherichia coli O157:H7 EDL933
ECs1840 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
2 alignments in 34:475 / 527 (83.9%), covering up to 49.8% of PF09972, 165.2 bits

• Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs
  Laserson, Nucleic acids research 2005
  • “...interestingly, the 39 nt sequences 1720 are identical copies found in hypothetical genes (yciQ, ECs1849, Z2542) of four different E.coli species. It is unlikely that candidate sequences 7/8 and 17/18/19/20 occur by chance. Table 3 shows that several other mostly shorter sequences (23, 1315, 2124, 2527,...”
  • “...2.24 18 E.coli O157:H7 1 826 735 ECs1840 19 E.coli O157:H7 EDL933 2 260 441 Z2542 20 E.coli CFT073 1 569 619 yciQ 21 E.coli O157:H7 1 373 724 ECs1300 22 5-ATTCACTGGG CGACATGTTT GATGAAT E.coli O157:H7 EDL933 1 457 496 Z1560 5.55 61.4 1.41 23 E.coli...”
• Construction and Analysis of Gene Co-Expression Networks in Escherichia coli
  Liu, Cells 2018
  • “...Ornithine carbamoyltransferase subunit I Green rpsN 30S ribosomal protein S14 Greenyellow c0944 Hypothetical protein Grey60 ECs1840 Hypothetical protein Ivory fecR Anti-sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA-bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator Lightcyan1 ECs3950 RNA polymerase sigma factor...”
• Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs
  Laserson, Nucleic acids research 2005
  • “...K12 1 324 039 yciQ 6.10 57.8 + 2.24 18 E.coli O157:H7 1 826 735 ECs1840 19 E.coli O157:H7 EDL933 2 260 441 Z2542 20 E.coli CFT073 1 569 619 yciQ 21 E.coli O157:H7 1 373 724 ECs1300 22 5-ATTCACTGGG CGACATGTTT GATGAAT E.coli O157:H7 EDL933 1...”

Or search for genetic data about PF09972 in the Fitness Browser