PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF09972 (DUF2207)

PF09972.9 hits 13 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

LBP_cg2385 DUF2207 domain-containing protein from Lactobacillus plantarum subsp. plantarum P-8
Aligns to 65:566 / 641 (78.3%), covers 100.0% of PF09972, 363.5 bits

SMc00852 HYPOTHETICAL TRANSMEMBRANE SIGNAL PEPTIDE PROTEIN (NCBI ptt file) from Sinorhizobium meliloti 1021
2 alignments in 26:564 / 644 (83.7%), covering up to 88.4% of PF09972, 333.1 bits

Bbr_0375 DUF2207 domain-containing protein from Bifidobacterium breve UCC2003
Aligns to 39:628 / 751 (78.6%), covers 99.2% of PF09972, 331.9 bits

Balac_0325 hypothetical protein (RefSeq) from Bifidobacterium animalis subsp. lactis Bl-04
Aligns to 39:630 / 738 (80.2%), covers 99.2% of PF09972, 312.3 bits

Spy49_0238 hypothetical protein (RefSeq) from Streptococcus pyogenes NZ131
Aligns to 27:572 / 604 (90.4%), covers 99.8% of PF09972, 265.3 bits

SP_0454 hypothetical protein (RefSeq) from Streptococcus pneumoniae TIGR4
Aligns to 27:561 / 630 (84.9%), covers 99.6% of PF09972, 256.4 bits

SPD_0414 hypothetical protein (NCBI) from Streptococcus pneumoniae D39
Aligns to 26:560 / 629 (85.1%), covers 99.6% of PF09972, 255.3 bits

YPO2731 putative membrane protein (NCBI ptt file) from Yersinia pestis CO92
Aligns to 51:607 / 679 (82.0%), covers 99.8% of PF09972, 236.7 bits

YciP / b1268 DUF2207 domain-containing protein YciQ from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b1268 predicted inner membrane protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 34:574 / 631 (85.7%), covers 99.2% of PF09972, 234.0 bits

YP_002236173 hypothetical protein (RefSeq) from Klebsiella pneumoniae 342
Aligns to 50:608 / 681 (82.1%), covers 99.2% of PF09972, 233.4 bits

c1733 Hypothetical protein yciQ (NCBI ptt file) from Escherichia coli CFT073
Aligns to 35:575 / 630 (85.9%), covers 99.2% of PF09972, 227.0 bits

BLi00351 hypothetical protein (NCBI) from Bacillus licheniformis DSM 13
Aligns to 27:571 / 631 (86.4%), covers 99.0% of PF09972, 210.1 bits

Z2542 No description from Escherichia coli O157:H7 EDL933
ECs1840 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
2 alignments in 34:475 / 527 (83.9%), covering up to 49.8% of PF09972, 165.2 bits

Or search for genetic data about PF09972 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory