Family Search for PF09997 (DUF2238)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF09997 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YjdF / b4121 DUF2238 domain-containing inner membrane protein YjdF from Escherichia coli K-12 substr. MG1655 (see paper)
Aligns to 42:182 / 209 (67.5%), covers 100.0% of PF09997, 197.0 bits

VCA0789 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 39:177 / 195 (71.3%), covers 98.6% of PF09997, 176.8 bits

• A conserved RNA seed-pairing domain directs small RNA-mediated stress resistance in enterobacteria
  Peschek, The EMBO journal 2019
  • “...vc1744 , vca0996 , vc2240 , vc1485 , vc0429 , vca0447 , vca0845 , and vca0789 by MicV and/or VrrA with the reporter assays ( AppendixTableS2 ), suggesting that these genes might not be directly controlled by the sRNAs or that the relevant basepairing sequences are...”

MHA_0266 DUF2238 domain-containing protein from Mannheimia haemolytica PHL213
Aligns to 41:183 / 208 (68.8%), covers 98.6% of PF09997, 166.7 bits

• Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213
  Reddy, BMC bioinformatics 2012
  • “...expressed under normal culture conditions. For example, genes related to leukotoxin (MHA_0253, MHA_0254, MHA_0255 and MHA_0266), an important virulence factor, were all expressed. Also, the 12 capsule forming genes whose role in virulence includes adherence to host and resistance to serum-mediated killing and phagocytosis [ 45...”

HTZ92_0737 DUF2238 domain-containing protein from Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
Aligns to 42:191 / 213 (70.4%), covers 100.0% of PF09997, 150.7 bits

• Genome diversity of domesticated Acinetobacter baumannii ATCC 19606^T strains
  Artuso, Microbial genomics 2022
  • “...403/345/403 GO593_03295/FQU82_03219 HTZ92_0363 Methyltransferase DMO12_09396 (286) Aminoacid change 261181 2939754 G ->A G40D 213/213/213 GO593_01345/FQU82_02834 HTZ92_0737 Hypothetical protein DMO12_08034 (213) 1149064 3827640 A ->T V56D 265/265/265 GO593_05440/FQU82_03650 HTZ92_3585 MBL fold metallo-hydrolase DMO12_10692 (265) 1168711 3847287 A ->T T36S 70/70/70 GO593_05520/FQU82_03666 HTZ92_3569 Hypothetical protein DMO12_10740 (70) 3331716...”

DMO12_08034 DUF2238 domain-containing protein from Acinetobacter baumannii ACICU
Aligns to 42:191 / 213 (70.4%), covers 100.0% of PF09997, 150.1 bits

• Genome diversity of domesticated Acinetobacter baumannii ATCC 19606^T strains
  Artuso, Microbial genomics 2022
  • “...Methyltransferase DMO12_09396 (286) Aminoacid change 261181 2939754 G ->A G40D 213/213/213 GO593_01345/FQU82_02834 HTZ92_0737 Hypothetical protein DMO12_08034 (213) 1149064 3827640 A ->T V56D 265/265/265 GO593_05440/FQU82_03650 HTZ92_3585 MBL fold metallo-hydrolase DMO12_10692 (265) 1168711 3847287 A ->T T36S 70/70/70 GO593_05520/FQU82_03666 HTZ92_3569 Hypothetical protein DMO12_10740 (70) 3331716 2029407 A ->G...”

Or search for genetic data about PF09997 in the Fitness Browser