Family Search for PF10049 (DUF2283)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF10049 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

AFE_0582 DUF2283 domain-containing protein from Acidithiobacillus ferrooxidans ATCC 23270
Aligns to 2:50 / 65 (75.4%), covers 98.0% of PF10049, 74.6 bits

• Insights into the Quorum Sensing Regulon of the Acidophilic Acidithiobacillus ferrooxidans Revealed by Transcriptomic in the Presence of an Acyl Homoserine Lactone Superagonist Analog
  Mamani, Frontiers in microbiology 2016
  • “...inferred from bioinformatic prediction ( Farah et al., 2005 ; Banderas and Guiliani, 2013 ): AFE_0582 and AFE_1998 encoding hypothetical proteins as well as afeI (AFE_1999). This could be due to an indirect regulation through a regulator whose expression is controlled by QS. However, the two...”

MJ0789 M. jannaschii predicted coding region MJ0789 from Methanocaldococcus jannaschii DSM 2661
Aligns to 4:51 / 116 (41.4%), covers 100.0% of PF10049, 52.1 bits

• PerPlot & PerScan: tools for analysis of DNA curvature-related periodicity in genomic nucleotide sequences
  Mrázek, Microbial informatics and experimentation 2011
  • “...Methanothermobacter marburgensis MJ0788 712302 712541 + hypothetical protein Methanosarcina mazei Methanoplanus petrolearius + Neosartorya fischeri MJ0789 712624 712974 + hypothetical protein Methanohalophilus mahii Methanosarcina mazei Methanosarcina barkeri MJ0790 713009 713698 + NADH dehydrogenase subunit 1 Methanothermus fervidus Methanothermobacter thermoautotrophicus Methanothermobacter marburgensis MJ0791 713720 715174 - argininosuccinate...”

MMP0478 conserved hypothetical protein from Methanococcus maripaludis S2
Aligns to 6:54 / 125 (39.2%), covers 95.9% of PF10049, 48.1 bits

• Using genome comparisons of wild-type and resistant mutants of Methanococcus maripaludis to help understand mechanisms of resistance to methane inhibitors
  Long, Access microbiology 2021
  • “...version of this article). These two loci were present in a 580bp intergenic region between mmp0478 and mmp0479 . These two genes encode proteins of unknown function. For the S0001-derived mutants, no mutations were identified that were shared by all four mutants (File S2). Ten mutations...”
  • “...in S2-derived echinomycin-resistant mutants. These two mutations mapped to an intergenic region between the genes mmp0478 and mmp0479 (conserved hypothetical proteins with no annotated function) suggesting an effect on gene transcription. No shared mutations were found in the S0001-derived resistant mutants. These observations suggested that resistance...”

HPR_METMA / Q8Q0D6 Putative hypoxanthine phosphoribosyltransferase; EC 2.-.-.- from Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarcina frisia) (see paper)
Aligns to 9:56 / 123 (39.0%), covers 100.0% of PF10049, 40.7 bits

• function: May play a role in purine salvage
  disruption phenotype: Cells have increased resistance to the purine analog 8-aza-2,6-diaminopurine (8-ADP).

BA1030 conserved hypothetical protein from Bacillus anthracis str. Ames
Aligns to 4:57 / 136 (39.7%), covers 91.8% of PF10049, 37.3 bits

• Use of denaturing high-performance liquid chromatography to identify Bacillus anthracis by analysis of the 16S-23S rRNA interspacer region and gyrA gene
  Hurtle, Journal of clinical microbiology 2003
  • “...BA1020 BA1021 BA1022 BA1023 BA1024 BA1025 BA1026 BA1027 BA1030 BA1031 BA1032 BA1033 BA1036, Sterne BA1037 BA1175 BA1176, SPS 97.13.079 Delta ANR Delta Sterne...”
  • “...BACI176 BACI197 BACI205 BACI192 BACI173 BACI206 BA1021 BA1030 BACI169 BA1025 BACI052 BA1015 BACI170 BACI203 BACI166 BACI174 BACI185 BACI172 BA1021 BA1023...”

BSU31810 hypothetical protein from Bacillus subtilis subsp. subtilis str. 168
Aligns to 3:54 / 129 (40.3%), covers 91.8% of PF10049, 36.3 bits

• Secondary structural entropy in RNA switch (Riboswitch) identification
  Manzourolajdad, BMC bioinformatics 2015
  • “...543132 543288 reverse BSU05000 yddK -2955 0.4904 11697 immR BSU04820 0.84 71 3268320 3268476 forward BSU31810 yuzE -4017 0.4522 8557 yukF BSU31920 0.84 72 2065804 2065960 forward BSU18960 yozM -348 0.3758 8557 yobN BSU19020 0.839 73 45296 45452 reverse BSU01550 gerD -113140 0.3822 236 abrB BSU00370...”
  • “...2061478 2061634 reverse BSU18930 yobH -1953 0.3439 864 yozJ BSU18900 0.82 67 3268477 3268633 forward BSU31810 yuzE -4174 0.3949 8400 yukF BSU31920 0.82 68 3107044 3107200 forward BSU30340 ytvA 30 0.2675 1492 yttA BSU30360 0.82 69 2262616 2262772 reverse BSU21440 bdbB -2530 0.3885 15151 youB BSU21329...”

Or search for genetic data about PF10049 in the Fitness Browser