Family Search for PF10065 (DUF2303)

PF10065 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

NMB0906 hypothetical protein from Neisseria meningitidis MC58
Aligns to 1:283 / 284 (99.6%), covers 99.3% of PF10065, 320.2 bits

• The Phosphocarrier Protein HPr Contributes to Meningococcal Survival during Infection
  Antunes, PloS one 2016
  • “...NMB0907 hypothetical protein Function unknown 2.00 0.00 NMB1336 conserved hypothetical protein Function unknown 2.06 0.00 NMB0906 conserved hypothetical protein Function unknown 2.08 0.00 NMB0552 conserved hypothetical integral membrane protein Inorganic ion transport and metabolism 2.17 0.00 NMB0901 D-lactate dehydrogenase-like protein Energy production and conversion 2.20 0.00...”
• Virulence evolution of the human pathogen Neisseria meningitidis by recombination in the core and accessory genome
  Joseph, PloS one 2011
  • “...protein 20.32 2.62 - 287.23 0.015 NMB0904 Hypothetical periplasmic protein 20.32 2.62 - 287.23 0.016 NMB0906 Phage associated conserved protein 20.32 2.62 - 287.23 0.017 NMB0907 Conserved hypothetical protein 20.32 2.62 - 287.23 0.018 NMB0910 Putative phage HTH-type transcriptional regulator 20.32 2.62 - 287.23 0.019 NMB0916...”
• Comparative genome biology of a serogroup B carriage and disease strain supports a polygenic nature of meningococcal virulence
  Joseph, Journal of bacteriology 2010
  • “...lbpB acnB aroB Poorly characterized NMB0330 NMB0546 NMB0902 NMB0906 NMB0995 NMB1048 NMB1494 NMB1753 NMB1906 Not in COGs NMB0374 NMB0460 NMB0467 NMB0483 NMB0555...”
• Analysis of the heat shock response of Neisseria meningitidis with cDNA- and oligonucleotide-based DNA microarrays
  Guckenberger, Journal of bacteriology 2002
  • “...NMB0165 NMB0214 NMB0294 NMB0370 NMB0557 NMB0561 NMB0604 NMB0906 NMB0907 NMB0946 NMB0947 NMB1056 NMB1231 NMB1334 NMB1377 NMB1468 NMB1469 NMB1472 NMB1563 NMB1564...”

YfdQ / b2360 CPS-53 (KpLE1) prophage; DUF2303 domain-containing protein YfdQ from Escherichia coli K-12 substr. MG1655 (see 3 papers)
P76513 Uncharacterized protein YfdQ from Escherichia coli (strain K12)
b2360 CPS-53 (KpLE1) prophage; predicted protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 6:272 / 274 (97.4%), covers 99.6% of PF10065, 312.0 bits

• In vitro Determination of Extracellular Proteins from Xylella fastidiosa.
  Mendes, Frontiers in microbiology 2016
  • “...protein, xfp3 36.5 XF1577 XF1314 - No No 0.538 Phage-related protein, xfp4 30.4 XF1649 XF1379 P76513 No No 0.065 Phosphoserine aminotransferase (PSAT) 39.6 XF2326 XF2012 Q9PB19 No No 0.163 PilA2 Tfp pilus assembly protein, 15.4 XF2539 XF2216 P17837 No No 0.937 Porin O (POP) 43.7 XF0975...”
• Genome evolution in major Escherichia coli O157:H7 lineages
  Zhang, BMC genomics 2007
  • “...ORFs in K-island (KI) #71 (b1142, b1147, b1148, and b1152) and four ORFs in KI#121 (b2360, b2361, b2362 and b2363) were identified as being present in all lineage II strains but not lineage I strains. Only the two ORFs in KI#121 (b2360, b2361) were also present...”
  • “...protein; ymfM 0% 0% 100% KI#71 b1152 orf, hypothetical protein; b1152 0% 0% 100% KI#121 b2360 orf, hypothetical protein; b2360 0% 100% 100% KI#121 b2361 orf, hypothetical protein; b2360 0% 100% 100% KI#121 b2362 orf, hypothetical protein; b2362 0% 0% 100% KI#121 b2363 orf, hypothetical protein;...”
• Identification and mapping of self-assembling protein domains encoded by the Escherichia coli K-12 genome by use of lambda repressor fusions
  Mariño-Ramírez, Journal of bacteriology 2004
  • “...b2007 b2101 b2157 b2160 b2245 b2249 b2291 b2294 b2355 b2360 b2398 b2399 b2427 b2443 b2450 b2561 b2556 b2664 b2735 b2738 b2869 b3105 b3200 b3243 b3346 b3376...”
• Complete genomic sequence of SfV, a serotype-converting temperate bacteriophage of Shigella flexneri
  Allison, Journal of bacteriology 2002
  • “...24188423364 274 30.5 4.8 Unknown YfdQ (hypothetical protein b2360; 274 aa; E. coli prophage KpLE1b) AE000324 Hypothetical protein XF1649 (273 aa; Xylella...”
  • “...orf-32, orf-31, orf-30, orf-29, orf-28 2994-5658 b2359, b2360, b2361, b2362, b2363 96 29880-29041 (839) (orf-39), orf-40, (orf-41) 1540-2379 (b2358), b2357,...”
• Classification and evolutionary history of the single-strand annealing proteins, RecT, Redbeta, ERF and RAD52
  Iyer, BMC genomics 2002
  • “...phage SLT, Orf100a:0rf100a of Staphylococcus aureus temperate phage SLT, ORF364: ORF364 of bacteriophage 31.1, Ec2360: b2360 of E. coli, AcylTr: N-Acyltransferase, Bro: Bro-N domain fused to XF0704, Met: DNA Methyltransferase ERF defines a superfamily of SSAPs that are evolutionarily distinct from the RecT/Red super family The...”

XF1649 conserved hypothetical protein from Xylella fastidiosa 9a5c
XF_1649 YfdQ family protein from Xylella fastidiosa 9a5c
Aligns to 2:269 / 273 (98.2%), covers 99.6% of PF10065, 299.7 bits

• In vitro Determination of Extracellular Proteins from Xylella fastidiosa
  Mendes, Frontiers in microbiology 2016
  • “...0.098 Phage-related protein, xfp3 36.5 XF1577 XF1314 - No No 0.538 Phage-related protein, xfp4 30.4 XF1649 XF1379 P76513 No No 0.065 Phosphoserine aminotransferase (PSAT) 39.6 XF2326 XF2012 Q9PB19 No No 0.163 PilA2 Tfp pilus assembly protein, 15.4 XF2539 XF2216 P17837 No No 0.937 Porin O (POP)...”
  • “...pathogenicity ( Jang et al., 2014 ). Additionally, four phage-related proteins were identified (XF1577, XF1704, XF1649 only in 9a5c; and XF0714 only in J1a12). Adhesins, such as fimbrial FimX (XF0083) and PilA2 (XF2539), which are components of type IV pilus biogenesis, and non-fimbrial XadA (XF1981) were...”
• Complete genomic sequence of SfV, a serotype-converting temperate bacteriophage of Shigella flexneri
  Allison, Journal of bacteriology 2002
  • “...aa; E. coli prophage KpLE1b) AE000324 Hypothetical protein XF1649 (273 aa; Xylella fastidiosa) AE003991 e-150 (99) 2e-39 (56) 32 24616424254 120 13.1 5.9...”
• Transcriptome and Secretome Analyses of Endophyte Methylobacterium mesophilicum and Pathogen Xylella fastidiosa Interacting Show Nutrient Competition
  Dourado, Microorganisms 2023
  • “...39 - XF9a_01043 XF_1133 Tryptophan repressor binding protein WrbA 20 10 0.92 40 24 XF9a_01514 XF_1649 Protein of Unknown Function 30 11 41 - XF9a_00742 XF_0816 Zn-dependent peptidase 108 4 42 - XF9a_00954 XF_1036 Porin 111 9 33|34 43 27 XF9a_00221 XF_0239 Polyribonucleotide nucleotidyltransferase Pnp 76...”

Q8HAA2 Sb36 from Salmonella phage ST64B
STMMW_20261, STMUK_2022 DUF2303 family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1
Aligns to 10:273 / 275 (96.0%), covers 90.3% of PF10065, 246.5 bits

• Increased excision of the Salmonella prophage ST64B caused by a deficiency in Dam methylase
  Alonso, Journal of bacteriology 2005 (secret)
• A window into lysogeny: revealing temperate phage biology with transcriptomics
  Owen, Microbial genomics 2020
  • “...remaining D23580 prophages in these two conditions. The STnc1310 ncRNA, and two genes STMMW_20251 and STMMW_20261 that are encoded downstream of the prophage CI repressor, were also highly expressed in the hydrogen peroxide and nitric oxide shock conditions. However, these features are functionally uncharacterized; therefore, the...”
• Transcriptional Profiling of a Cross-Protective Salmonella enterica serovar Typhimurium UK-1 dam Mutant Identifies a Set of Genes More Transcriptionally Active Compared to Wild-Type, and Stably Transcribed across Biologically Relevant Microenvironments
  Miller, Pathogens (Basel, Switzerland) 2014
  • “...7.35 12.62 4.26 NP Hypothetical bacteriophage protein STMUK_2021 13.14 26.39 3.18 NP Hypothetical bacteriophage protein STMUK_2022 11.69 20.75 3.46 NP Hypothetical bacteriophage protein STMUK_2023 12.09 24.14 2.81 NP Similar to phage protein STMUK_2024 8.37 12.71 NP NP Hypothetical bacteriophage protein STMUK_2025 9.37 10.70 NP NP Hypothetical...”

ROD_26241 hypothetical protein from Citrobacter rodentium ICC168
Aligns to 18:273 / 275 (93.1%), covers 90.3% of PF10065, 240.9 bits

• Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux
  Petty, PLoS pathogens 2011
  • “...ROD_25761 400 hypothetical protein 14 ROD_26221 1415 hypothetical protein 15 ROD_26231 596 hypothetical protein 16 ROD_26241 213 hypothetical protein CRP38 17 ROD_36461 299 putative exported protein 18 ROD_36471 129 putative membrane protein 19 ROD_36481 226 putative host toxic membrane protein 20 ROD_36801 262 putative membrane protein...”

YP_002922683 hypothetical protein from Burkholderia phage BcepIL02
Aligns to 7:276 / 280 (96.4%), covers 97.8% of PF10065, 210.0 bits

• A novel inducible prophage from the mycosphere inhabitant Paraburkholderia terrae BS437
  Pratama, Scientific reports 2017
  • “...14961 15794 278 Hypothetical protein Hypothetical protein BcepIL02_gp11 [ Burkholderia virus Bcepil02] 96 6E-50 36 YP_002922683 34 + 15870 16580 237 Phage-related protein Hypothetical protein F116p07 [ Pseudomonas phage F116] 99 5E-47 45 YP_164271 35 + 16577 16912 112 Hypothetical protein Hypothetical protein DC1_00025 [ Burkholderia...”

YPK_1205 hypothetical protein from Yersinia pseudotuberculosis YPIII
Aligns to 2:256 / 259 (98.5%), covers 90.7% of PF10065, 207.2 bits

• Environmental Regulation of Yersinia Pathophysiology
  Chen, Frontiers in cellular and infection microbiology 2016
  • “...negative modulation include polynucleotide phosphorylase / polyadenylase ( pnp YPK_3726) and protein of unknown function YPK_1205 (Lu et al., 2012 ). Subsequent analyses confirmed that YPIII SraG sRNA regulates post-transcriptional production of YPK_1205 (Lu et al., 2012 ). Specifically, mutation in sraG resulted in increased YPK_1205...”
• Yersinia pestis and Yersinia pseudotuberculosis infection: a regulatory RNA perspective
  Martínez-Chavarría, Frontiers in microbiology 2015
  • “...potential regulatory targets of SraG ( Lu et al., 2012 ). However, only pnp and YPK_1205 showed significantly different mRNA levels when a RT-PCR validation of these targets was performed. It was shown that SraG negatively regulates the YPK_1206-1205 operon post-transcriptionally by likely targeting the coding...”
• New developments in post-transcriptional regulation of operons by small RNAs
  Balasubramanian, RNA biology 2013
  • “...mRNA, YPK_1206-1205.36 While the functions of the YPK_1205 and RNA Biology YPK_1206 proteins are also unknown, translational reporter fusions to both...”

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