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Family Search for PF10239 (DUF2465)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

Running HMMer for PF10239

PF10239 hits 13 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

FA98A_HUMAN / Q8NCA5 Protein FAM98A from Homo sapiens (Human) (see paper)
Aligns to 28:327 / 518 (57.9%), covers 99.7% of PF10239, 432.5 bits

FA98A_MOUSE / Q3TJZ6 Protein FAM98A from Mus musculus (Mouse) (see paper)
Aligns to 28:327 / 515 (58.3%), covers 99.7% of PF10239, 431.9 bits

Q80VD1 Protein FAM98B from Mus musculus
Aligns to 34:330 / 429 (69.2%), covers 99.7% of PF10239, 430.6 bits

Q5FWT1 Protein FAM98A from Rattus norvegicus
Aligns to 28:327 / 515 (58.3%), covers 99.7% of PF10239, 430.5 bits

D4AE02 Family with sequence similarity 98, member B from Rattus norvegicus
Aligns to 34:330 / 434 (68.4%), covers 99.7% of PF10239, 430.3 bits

FAM98B / Q52LJ0 tRNA-splicing ligase complex FAM98B component (EC 6.5.1.8) from Homo sapiens (see 2 papers)
FA98B_HUMAN / Q52LJ0 Protein FAM98B from Homo sapiens (Human) (see 5 papers)
NP_775882 protein FAM98B from Homo sapiens
Aligns to 34:330 / 433 (68.6%), covers 99.7% of PF10239, 428.6 bits

CG5913 uncharacterized protein from Drosophila melanogaster
Aligns to 26:331 / 454 (67.4%), covers 99.3% of PF10239, 378.3 bits

XP_006500159 protein FAM98B isoform X1 from Mus musculus
2 alignments in 34:303 / 402 (67.2%), covering up to 49.0% of PF10239, 372.2 bits

E9PH82 Family with sequence similarity 98 member A from Homo sapiens
Aligns to 28:301 / 312 (87.8%), covers 90.1% of PF10239, 359.3 bits

F1RI46 Family with sequence similarity 98 member C from Sus scrofa
Aligns to 25:338 / 357 (88.0%), covers 98.7% of PF10239, 315.1 bits

Q6AXA1 Family with sequence similarity 98 member A L homeolog from Xenopus laevis
Aligns to 71:368 / 385 (77.4%), covers 99.3% of PF10239, 314.5 bits

Q17RN3 Protein FAM98C from Homo sapiens
Aligns to 26:334 / 349 (88.5%), covers 98.7% of PF10239, 301.3 bits

NP_001291467 protein FAM98A isoform 2 from Homo sapiens
Aligns to 1:132 / 323 (40.9%), covers 43.0% of PF10239, 229.2 bits

Or search for genetic data about PF10239 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory