Family Search for PF10674 (Ycf54)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF10674 hits 20 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
slr1780 / P72777 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase auxiliary factor (EC 1.14.13.81) from Synechocystis sp. (strain PCC 6803 / Kazusa) (see 3 papers)
P72777 Ycf54-like protein from Synechocystis sp. (strain PCC 6803 / Kazusa)
slr1780 hypothetical protein from Synechocystis sp. PCC 6803
Aligns to 29:120 / 133 (69.2%), covers 98.9% of PF10674, 140.8 bits
- Three classes of oxygen-dependent cyclase involved in chlorophyll and bacteriochlorophyll biosynthesis
Chen, Proceedings of the National Academy of Sciences of the United States of America 2017 - “...either Rba. sphaeroides BciE (WP_002720458) or Synechocystis Ycf54 (P72777) as a query. Distribution patterns of BciE and Ycf54 orthologs are seemingly related...”
- Conserved chloroplast open-reading frame ycf54 is required for activity of the magnesium protoporphyrin monomethylester oxidative cyclase in Synechocystis PCC 6803
Hollingshead, The Journal of biological chemistry 2012 - “...ACSF1 42,525 783 29 Allophycocyanin chain Q01951 PHAA P72777 YC54L P26527 ATPB 17,458 56 14 15,446 40 9 51,758 23 3 Magnesium-protoporphyrin IX monomethyl...”
- “...Sll1874 P74134 ACSF2 42,313 436 27 C-phycocyanin chain Q54714 PHCB P72777 YC54L P72584 ACSF1 18,286 33 16 15,446 26 11 42,525 25 8 54,046 24 2 17,458 22 14...”
- Three classes of oxygen-dependent cyclase involved in chlorophyll and bacteriochlorophyll biosynthesis
Chen, Proceedings of the National Academy of Sciences of the United States of America 2017 - “...loss of cycI in Synechocystis. Subsequently, deletion of ycf54 (slr1780) in acsFRg+ cycI was achieved by replacement of the native gene with a zeocin resistance...”
- Conserved residues in Ycf54 are required for protochlorophyllide formation in Synechocystis sp. PCC 6803
Hollingshead, The Biochemical journal 2017 - “...in Arabidopsis in biomolecular fluorescence complementation assays. Disruption of the ycf54 locus in Synechocystis ( slr1780 ) [ 19 ] and Arabidopsis ( LCAA ) [ 17 ] led to accumulation of MgPME and reduced synthesis of Pchlide and Chl a , although the lower levels...”
- Synthesis of Chlorophyll-Binding Proteins in a Fully Segregated Δycf54 Strain of the Cyanobacterium Synechocystis PCC 6803
Hollingshead, Frontiers in plant science 2016 - “...mM glucose. Construction of the ycf54 Synechocystis Strain In order to disrupt open reading frame slr1780 ( ycf54 ), we prepared a construct for replacing the most this gene (bp 64276) by a Zeocin resistance cassette. The sequences up- and down-stream (~300 bp) of the ycf54...”
- “...in Synechocystis and the whole-cell spectra the resulting ycf54 strain. (A) PCR amplification of the slr1780 ( ycf54 ) region to confirm full segregation of the Zeocin resistance cassette. WT, wild-type. (B) Whole cell absorbance spectra of Synechocystis whole cells grown photomixotrophically under low light conditions....”
- Evolutionary Aspects and Regulation of Tetrapyrrole Biosynthesis in Cyanobacteria under Aerobic and Anaerobic Environments
Fujita, Life (Basel, Switzerland) 2015 - “...to significantly stimulate the MPE cyclase activity in barley etioplasts [ 42 ]. In addition, Slr1780 was identified as a protein interacting with ChlA I and ChlA II in Synechocystis 6803 [ 43 ]. The slr1780 gene is an ortholog of ycf54 that is a conserved...”
- “...was drastically decreased (about 30% of the wild-type), and MPE was accumulated in the mutant slr1780 [ 43 ]. Interaction between ChlA and Ycf54 was confirmed in barley etioplasts [ 37 ]. A tobacco Ycf54 ortholog, LCAA, has also been reported [ 44 ]. Ycf54 appears...”
- Conserved chloroplast open-reading frame ycf54 is required for activity of the magnesium protoporphyrin monomethylester oxidative cyclase in Synechocystis PCC 6803
Hollingshead, The Journal of biological chemistry 2012 - “...Ycf54 as bait. Inactivation of the ycf54 gene (slr1780) in Synechocystis 6803 resulted in a strain that exhibited significantly reduced Chl levels. A detailed...”
- “...together with Sll1214. Inactivation of the ycf54 gene (slr1780) results in a significant reduction of cellular Chl and PChlide levels and the accumulation of...”
- Comparative analysis of chloroplast genomes: functional annotation, genome-based phylogeny, and deduced evolutionary patterns
De, Genome research 2002 - “...sll1796 petJ 0.0822 slr0966 trpA 0.0822 slr0623 trxA 0.0822 slr1780 ycf 0.0822 sll1737 ycf 0.0822 sll0558 ycf 0.0822 sll1879 ycf Branch EugGra 0.0731 -- ycf...”
NP_923828 hypothetical protein from Gloeobacter violaceus PCC 7421
Aligns to 3:93 / 109 (83.5%), covers 100.0% of PF10674, 125.8 bits
NP_001131876 uncharacterized protein LOC100193255 from Zea mays
Aligns to 74:164 / 211 (43.1%), covers 100.0% of PF10674, 125.1 bits
- Protochlorophyllide synthesis by recombinant cyclases from eukaryotic oxygenic phototrophs and the dependence on Ycf54
Chen, The Biochemical journal 2020 - “...subellipsoidea C-169 (XP_005642819); the liverwort Marchantia polymorpha (PTQ33664); higher plants, Brachypodium distachyon (XP_003557990), Zea mays (NP_001131876), Spinacia oleracea (XP_021852323), Vitis vinifera (XP_010650790), Erythranthe guttata (XP_012838088), Ipomoea nil (XP_019188624), Solanum lycopersicum (XP_004240451), Medicago truncatula (XP_013460499), Lotus japonicus (AFK37846). Full-length sequences were used for alignments but for clarity,...”
XP_012838088 uncharacterized protein LOC105958630 from Erythranthe guttata
Aligns to 79:169 / 214 (42.5%), covers 100.0% of PF10674, 123.9 bits
- Protochlorophyllide synthesis by recombinant cyclases from eukaryotic oxygenic phototrophs and the dependence on Ycf54
Chen, The Biochemical journal 2020 - “...plants, Brachypodium distachyon (XP_003557990), Zea mays (NP_001131876), Spinacia oleracea (XP_021852323), Vitis vinifera (XP_010650790), Erythranthe guttata (XP_012838088), Ipomoea nil (XP_019188624), Solanum lycopersicum (XP_004240451), Medicago truncatula (XP_013460499), Lotus japonicus (AFK37846). Full-length sequences were used for alignments but for clarity, only the C-terminal extension regions with the residue range...”
XP_013460499 uncharacterized protein LOC25489165 from Medicago truncatula
Aligns to 79:169 / 216 (42.1%), covers 98.9% of PF10674, 122.4 bits
XP_015628146 uncharacterized protein LOC4332730 from Oryza sativa Japonica Group
Aligns to 69:159 / 206 (44.2%), covers 100.0% of PF10674, 122.3 bits
XP_016480530 uncharacterized protein LOC107801684 from Nicotiana tabacum
Aligns to 85:175 / 222 (41.0%), covers 100.0% of PF10674, 121.4 bits
F2D891 Predicted protein from Hordeum vulgare subsp. vulgare
Aligns to 72:162 / 209 (43.5%), covers 98.9% of PF10674, 120.9 bits
XP_010650790 uncharacterized protein LOC104879510 isoform X1 from Vitis vinifera
Aligns to 90:180 / 227 (40.1%), covers 98.9% of PF10674, 120.1 bits
- Protochlorophyllide synthesis by recombinant cyclases from eukaryotic oxygenic phototrophs and the dependence on Ycf54
Chen, The Biochemical journal 2020 - “...polymorpha (PTQ33664); higher plants, Brachypodium distachyon (XP_003557990), Zea mays (NP_001131876), Spinacia oleracea (XP_021852323), Vitis vinifera (XP_010650790), Erythranthe guttata (XP_012838088), Ipomoea nil (XP_019188624), Solanum lycopersicum (XP_004240451), Medicago truncatula (XP_013460499), Lotus japonicus (AFK37846). Full-length sequences were used for alignments but for clarity, only the C-terminal extension regions with...”
NP_053814 hypothetical protein from Porphyra purpurea
Aligns to 2:93 / 108 (85.2%), covers 98.9% of PF10674, 120.1 bits
- Protochlorophyllide synthesis by recombinant cyclases from eukaryotic oxygenic phototrophs and the dependence on Ycf54
Chen, The Biochemical journal 2020 - “...(ACA98109), Synechocystis sp. PCC 6803 (BAA16792), Acaryochloris marina MBIC11017 (ABW27358); red algae, Porphyra purpurea ( NP_053814), Bangia fuscopurpurea (AKE98807); green algae, Bathycoccus prasinos (XP_007514179), Ostreococcus tauri (XP_022839105), Chlamydomonas reinhardtii (XP_001691121); the moss Physcomitrella patens (XP_001756877); higher plants, Cucumis sativus (XP_004139926), Arabidopsis thaliana (NP_200633), Nicotiana tobacum (XP_016480530),...”
XP_003557990 uncharacterized protein LOC100832683 from Brachypodium distachyon
Aligns to 76:166 / 213 (42.7%), covers 98.9% of PF10674, 119.7 bits
- Protochlorophyllide synthesis by recombinant cyclases from eukaryotic oxygenic phototrophs and the dependence on Ycf54
Chen, The Biochemical journal 2020 - “...green alga Coccomyxa subellipsoidea C-169 (XP_005642819); the liverwort Marchantia polymorpha (PTQ33664); higher plants, Brachypodium distachyon (XP_003557990), Zea mays (NP_001131876), Spinacia oleracea (XP_021852323), Vitis vinifera (XP_010650790), Erythranthe guttata (XP_012838088), Ipomoea nil (XP_019188624), Solanum lycopersicum (XP_004240451), Medicago truncatula (XP_013460499), Lotus japonicus (AFK37846). Full-length sequences were used for alignments...”
XP_004139926 uncharacterized protein LOC101220505 from Cucumis sativus
Aligns to 88:178 / 226 (40.3%), covers 98.9% of PF10674, 118.7 bits
XP_019188624 uncharacterized protein LOC109182857 from Ipomoea nil
Aligns to 84:174 / 221 (41.2%), covers 100.0% of PF10674, 117.3 bits
- Protochlorophyllide synthesis by recombinant cyclases from eukaryotic oxygenic phototrophs and the dependence on Ycf54
Chen, The Biochemical journal 2020 - “...(XP_003557990), Zea mays (NP_001131876), Spinacia oleracea (XP_021852323), Vitis vinifera (XP_010650790), Erythranthe guttata (XP_012838088), Ipomoea nil (XP_019188624), Solanum lycopersicum (XP_004240451), Medicago truncatula (XP_013460499), Lotus japonicus (AFK37846). Full-length sequences were used for alignments but for clarity, only the C-terminal extension regions with the residue range indicated, are shown....”
XP_021852323 uncharacterized protein LOC110791864 from Spinacia oleracea
Aligns to 90:180 / 224 (40.6%), covers 100.0% of PF10674, 115.8 bits
- Protochlorophyllide synthesis by recombinant cyclases from eukaryotic oxygenic phototrophs and the dependence on Ycf54
Chen, The Biochemical journal 2020 - “...the liverwort Marchantia polymorpha (PTQ33664); higher plants, Brachypodium distachyon (XP_003557990), Zea mays (NP_001131876), Spinacia oleracea (XP_021852323), Vitis vinifera (XP_010650790), Erythranthe guttata (XP_012838088), Ipomoea nil (XP_019188624), Solanum lycopersicum (XP_004240451), Medicago truncatula (XP_013460499), Lotus japonicus (AFK37846). Full-length sequences were used for alignments but for clarity, only the C-terminal...”
XP_004240451 uncharacterized protein LOC101255002 from Solanum lycopersicum
Aligns to 77:167 / 214 (42.5%), covers 100.0% of PF10674, 114.8 bits
- Protochlorophyllide synthesis by recombinant cyclases from eukaryotic oxygenic phototrophs and the dependence on Ycf54
Chen, The Biochemical journal 2020 - “...(NP_001131876), Spinacia oleracea (XP_021852323), Vitis vinifera (XP_010650790), Erythranthe guttata (XP_012838088), Ipomoea nil (XP_019188624), Solanum lycopersicum (XP_004240451), Medicago truncatula (XP_013460499), Lotus japonicus (AFK37846). Full-length sequences were used for alignments but for clarity, only the C-terminal extension regions with the residue range indicated, are shown. Figure7. HPLC analysis...”
YCF54_ARATH / Q9LVM3 Protein YCF54, chloroplastic; Protein LOW CHLOROPHYLL ACCUMULATION from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G58250 hypothetical protein from Arabidopsis thaliana
EMB3143, NP_200633 YCF54 from Arabidopsis thaliana
Aligns to 74:164 / 211 (43.1%), covers 98.9% of PF10674, 111.8 bits
- function: Involved in the biosynthesis of chlorophyll; acts probably as a scaffolding factor in the MgProto monomethylester (MgProtoME) cyclase complex to stabilize CRD1/CHL27, the catalytic subunit which catalyzes the formation of a fifth isocyclic ring to tetrapyrroles to form protochlorophyllide (PubMed:29443418).
subunit: Interacts with LFNR1 and CRD1/CHL27 in chloroplasts.
disruption phenotype: Accumulation of MgProto monomethylester (MgProtoME) as a result of decreased CRD1/CHL27 accumulation leading to reduced cyclase activity of the MgProto monomethylester (MgProtoME) cyclase complex (PubMed:29443418). Leaf chlorosis due to a massive loss of photosynthetic protein complexes (PubMed:29443418). - Role of NPR1 in Systemic Acquired Stomatal Immunity
Guan, Plants (Basel, Switzerland) 2023 - “...Triosephosphate isomerase AT3G12780 Phosphoglycerate kinase 1 AT5G19760 Mitochondrial substrate carrier AT2G38270 CAX-interacting protein 2 (CXIP2) AT5G58250 Unknown protein AT1G15820 Light harvesting complex PS II subunit 6 AT4G25050 Acyl carrier protein 4 AT5G42980 Thioredoxin 3 AT1G08520 ALBINA 1 AT1G35680 Ribosomal protein L21 plants-12-02137-t003_Table 3 Table 3 The...”
- The tomato chloroplast stromal proteome compendium elucidated by leveraging a plastid protein-localization prediction Atlas
Bhattacharya, Frontiers in plant science 2023 - “...S15 5 4.062 Atcg01120 4 Solyc06g007760 YCF54 Ycf54 protein, Low chlorophyll accumulation (LCAA) 6 4.062 At5g58250 nd Solyc01g087040 TL19 Thylakoid lumenal 19-kDa protein 7 2.033 At3g63540 nd Solyc10g076350 Macrophage migration inhibitory factor family protein 8 2.033 At5g01650 nd Solyc08g074630 PPO-F K Polyphenol oxidase F 9 1.948...”
- Conditional GWAS of non-CG transposon methylation in Arabidopsis thaliana reveals major polymorphisms in five genes
Sasaki, PLoS genetics 2022 - “...AT5G58200, AT5G58210, AT5G58220 ( TTL ), AT5G58230 ( MSI1 ) , AT5G58240 ( FHIT ), AT5G58250, AT5G58260 ( NdhN ) * Bold denotes a priori epigenetic regulators Multi-layered direct CMT3 regulation affects mCHG variation Based on mutant phenotypes, CMT3 is a strong a priori candidate for...”
- NAD+-capped RNAs are widespread in the Arabidopsis transcriptome and can probably be translated
Wang, Proceedings of the National Academy of Sciences of the United States of America 2019 - “...homeostasis, as reflected by the nuclear genes AT5G58250 (Low Chlorophyll Accumulation A/ Hypothetical Chloroplast ORF 54, LCAA/YCF54) and AT5G38420 (Rubisco...”
- “...T4G D 80 60 40 20 0 AT5G58250 AT5G38420 AT5G42530 AT3G26740 AT2G03340 AT4G38840 ATMG00110 ATMG01170 ATMG01130 ATMG00160 ATMG00516 ATMG00670 ATCG01110 ATCG00430...”
- Microgravity induces changes in microsome-associated proteins of Arabidopsis seedlings grown on board the international space station
Mazars, PloS one 2014 - “...(p24 family protein beta2) (p24beta2) (p24 family protein beta3) (p24beta3) Q9LTB7 2.1824 Lil3 protein Q9LVM3 AT5G58250 2.2543 Uncharacterized protein Q9M1J1 AT3G57090 2.1494 AT3g57090/F24I3_170 (Mitochondrial fission protein AtFIS1a) (Protein BIGYIN1) (Putative uncharacterized protein F24I3.170) Q9SH90 1.7123 Putative uncharacterized protein At2g37970 (Putative uncharacterized protein At2g37970; T8P21.12) Tricarboxylic cycle...”
- The proteome of copper, iron, zinc, and manganese micronutrient deficiency in Chlamydomonas reinhardtii
Hsieh, Molecular & cellular proteomics : MCP 2013 - “...elsewhere (43). The segment of A. thaliana CGL78 (At5g58250) encoding amino acids S73-V211 was amplified from the cDNA clone U63260 (ABRC) using Phusion...”
- Coordination of plastid and light signaling pathways upon development of Arabidopsis leaves under various photoperiods
Lepistö, Molecular plant 2012 - “...2,13 LEAF FNR 2 Chloroplast Photosynthesis AT3G15800 2,07 Glycosyl hydrolase family 17 protein Carbohydrate metabolism AT5G58250 2,06 Unknown protein AT5G45300 2,04 BETA-AMYLASE 2 Carbohydrate metabolism AT5G14200 0,48 ISOPROPYLMALATE DEHYDROGENASE 1 Leucine biosynthesis AT3G07440 0,48 Unknown protein AT2G15020 0,47 Unknown protein AT4G13770 0,45 CYTOCHROME P450 83A1 Glucosinolate...”
- Deciphering the Proteotoxic Stress Responses Triggered by the Perturbed Thylakoid Proteostasis in Arabidopsis
Nishimura, Plants (Basel, Switzerland) 2021 - “...by the FtsH loss than by heat stress alone. CP29A/B and CP31 are RNA-binding proteins. EMB3143 is also known as YCF54 or LCAA (Low Chlorophyll Accumulation A) and functions as a scaffold protein for a tetrapyrrole biosynthesis enzyme, magnesium protoporphyrin monomethylester cyclase complex. RRF is chloroplast...”
- Protochlorophyllide synthesis by recombinant cyclases from eukaryotic oxygenic phototrophs and the dependence on Ycf54
Chen, The Biochemical journal 2020 - “...residues (F180, W186, A188, P189, Y190, Y193, W197, W198 and W201; numbering in Arabidopsis YCF54, NP_200633) among these species ( Figure 6B ). To investigate the potential role of the C-terminal extension, we truncated the Arabidopsis YCF54 gene to generate a YCF54* mutant, with the C-terminal...”
- “...Chlamydomonas reinhardtii (XP_001691121); the moss Physcomitrella patens (XP_001756877); higher plants, Cucumis sativus (XP_004139926), Arabidopsis thaliana (NP_200633), Nicotiana tobacum (XP_016480530), Hordeum vulgare L. cv. Bonus (BAJ91312), Oryza sativa L. ssp. japonica (XP_015628146). The conserved Ycf54 domain is indicated. The C-terminal 37 aa sequence deleted in the YCF54*...”
- Integrating the genetic and physical maps of Arabidopsis thaliana: identification of mapped alleles of cloned essential (EMB) genes
Meinke, PloS one 2009 - “...Yes EMB3012 EMB1276 60 EMB170 No EMB1276 71 EMB64 Yes None 79 EMB67 No EMB2755 EMB3143 ZEU1 EMB2407 82 EMB209 No EMB2731 EMB2755 EMB3143 EMB2407 85 EMB87* No EMB1629 ZEU1 DOM1 EMB2759 EMB2746 EMB2780 85 EMB15 No EMB1629 ZEU1 DOM1 EMB2759 EMB2746 EMB2780 91 EMB16 Yes...”
- Microgravity induces changes in microsome-associated proteins of Arabidopsis seedlings grown on board the international space station
Mazars, PloS one 2014 - “...p24beta3 (p24 family protein beta2) (p24beta2) (p24 family protein beta3) (p24beta3) Q9LTB7 2.1824 Lil3 protein Q9LVM3 AT5G58250 2.2543 Uncharacterized protein Q9M1J1 AT3G57090 2.1494 AT3g57090/F24I3_170 (Mitochondrial fission protein AtFIS1a) (Protein BIGYIN1) (Putative uncharacterized protein F24I3.170) Q9SH90 1.7123 Putative uncharacterized protein At2g37970 (Putative uncharacterized protein At2g37970; T8P21.12) Tricarboxylic...”
XP_022839105 Uncharacterised protein family Ycf54 from Ostreococcus tauri
Aligns to 17:109 / 153 (60.8%), covers 97.8% of PF10674, 110.6 bits
- Protochlorophyllide synthesis by recombinant cyclases from eukaryotic oxygenic phototrophs and the dependence on Ycf54
Chen, The Biochemical journal 2020 - “...algae, Porphyra purpurea ( NP_053814), Bangia fuscopurpurea (AKE98807); green algae, Bathycoccus prasinos (XP_007514179), Ostreococcus tauri (XP_022839105), Chlamydomonas reinhardtii (XP_001691121); the moss Physcomitrella patens (XP_001756877); higher plants, Cucumis sativus (XP_004139926), Arabidopsis thaliana (NP_200633), Nicotiana tobacum (XP_016480530), Hordeum vulgare L. cv. Bonus (BAJ91312), Oryza sativa L. ssp. japonica...”
XP_007514179 predicted protein from Bathycoccus prasinos
Aligns to 63:155 / 222 (41.9%), covers 97.8% of PF10674, 107.3 bits
- Protochlorophyllide synthesis by recombinant cyclases from eukaryotic oxygenic phototrophs and the dependence on Ycf54
Chen, The Biochemical journal 2020 - “...MBIC11017 (ABW27358); red algae, Porphyra purpurea ( NP_053814), Bangia fuscopurpurea (AKE98807); green algae, Bathycoccus prasinos (XP_007514179), Ostreococcus tauri (XP_022839105), Chlamydomonas reinhardtii (XP_001691121); the moss Physcomitrella patens (XP_001756877); higher plants, Cucumis sativus (XP_004139926), Arabidopsis thaliana (NP_200633), Nicotiana tobacum (XP_016480530), Hordeum vulgare L. cv. Bonus (BAJ91312), Oryza sativa...”
CHLREDRAFT_162021, XP_001691121 uncharacterized protein from Chlamydomonas reinhardtii
A8ILP2 Uncharacterized protein from Chlamydomonas reinhardtii
Aligns to 73:166 / 207 (45.4%), covers 97.8% of PF10674, 104.6 bits
- Protochlorophyllide synthesis by recombinant cyclases from eukaryotic oxygenic phototrophs and the dependence on Ycf54
Chen, The Biochemical journal 2020 - “...genes Gene fragments encoding Arabidopsis CHL27 (AT3G56940.1), YCF54 (AT5G58250.1), Chlamydomonas CRD1(CHLREDRAFT_183476), CTH1 (CHLREDRAFT_205856), and CGL78 (CHLREDRAFT_162021) proteins, lacking the N-terminal chloroplast transit peptides predicted by the ChloroP 1.1 Server [ 22 ], were synthesized (Integrated DNA Technologies) with codons optimized for expression in E. coli. It...”
- “...( NP_053814), Bangia fuscopurpurea (AKE98807); green algae, Bathycoccus prasinos (XP_007514179), Ostreococcus tauri (XP_022839105), Chlamydomonas reinhardtii (XP_001691121); the moss Physcomitrella patens (XP_001756877); higher plants, Cucumis sativus (XP_004139926), Arabidopsis thaliana (NP_200633), Nicotiana tobacum (XP_016480530), Hordeum vulgare L. cv. Bonus (BAJ91312), Oryza sativa L. ssp. japonica (XP_015628146). The conserved...”
- Metabolic responses to ethanol and butanol in Chlamydomonas reinhardtii
Jiang, Biotechnology for biofuels 2017 - “...RPS11 A8J8M5 0.21 0.25 10.47 Plastid ribosomal protein S5, PRPS5 A8HQP0 0.46 0.38 Transaldolase, TAL1 A8ILP2 0.48 0.19 Predicted protein A8J9H8 0.13 0.15 Nucleoside diphosphate kinase, FAP103 Q2HZ22 0.32 0.07 Putative ferredoxin, FDX5 Q42690 0.45 0.20 Chloroplastic fructose-bisphosphate aldolase 1, FBA3 a Proteins upregulated or downregulated...”
- “...(A8JG58 and A8IRL8) were found upregulated, and seven (A8IVP7, A8JAG1, A8J387, A8HVM3, A8J9F3, A8IWJ5, and A8ILP2) were downregulated by ethanol. Five hypothetical proteins (A8JHZ9, A8IX35, A8J6Y3, A8IUI1, and A8JBW0) were upregulated, while nine (A8JDM1, A8JAP7, A8IVS6, A8I0R6, A8I9M5, A8IPS8, A8IVP7, A8JCW5, and A8JHB7) were downregulated by...”
XP_005642819 hypothetical protein from Coccomyxa subellipsoidea C-169
Aligns to 9:101 / 151 (61.6%), covers 93.5% of PF10674, 94.7 bits
- Protochlorophyllide synthesis by recombinant cyclases from eukaryotic oxygenic phototrophs and the dependence on Ycf54
Chen, The Biochemical journal 2020 - “...and plant Ycf54 sequences are included, which are from the green alga Coccomyxa subellipsoidea C-169 (XP_005642819); the liverwort Marchantia polymorpha (PTQ33664); higher plants, Brachypodium distachyon (XP_003557990), Zea mays (NP_001131876), Spinacia oleracea (XP_021852323), Vitis vinifera (XP_010650790), Erythranthe guttata (XP_012838088), Ipomoea nil (XP_019188624), Solanum lycopersicum (XP_004240451), Medicago truncatula...”
Or search for genetic data about PF10674 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory